############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 rawDiag ### ############################################################################## ############################################################################## * checking for file ‘rawDiag/DESCRIPTION’ ... OK * preparing ‘rawDiag’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘rawDiag.Rmd’ using rmarkdown trying URL 'https://github.com/thermofisherlsms/RawFileReader/raw/main/Libs/Net471//ThermoFisher.CommonCore.BackgroundSubtraction.dll' Content type 'application/octet-stream' length 44544 bytes (43 KB) ================================================== downloaded 43 KB trying URL 'https://github.com/thermofisherlsms/RawFileReader/raw/main/Libs/Net471//ThermoFisher.CommonCore.Data.dll' Content type 'application/octet-stream' length 406016 bytes (396 KB) ================================================== downloaded 396 KB trying URL 'https://github.com/thermofisherlsms/RawFileReader/raw/main/Libs/Net471//ThermoFisher.CommonCore.MassPrecisionEstimator.dll' Content type 'application/octet-stream' length 11264 bytes (11 KB) ================================================== downloaded 11 KB trying URL 'https://github.com/thermofisherlsms/RawFileReader/raw/main/Libs/Net471//ThermoFisher.CommonCore.RawFileReader.dll' Content type 'application/octet-stream' length 654336 bytes (639 KB) ================================================== downloaded 639 KB trying URL 'https://github.com/fgcz/rawrr/releases/download/1.9.2/rawrr.1.9.2.exe' Content type 'application/octet-stream' length 28672 bytes (28 KB) ================================================== downloaded 28 KB Cannot open assembly '/home/biocbuild/.cache/R/rawrr/rawrrassembly/rawrr.exe': File does not contain a valid CIL image. Quitting from lines 266-270 [readEH4547OrbitrapTrailerTable] (rawDiag.Rmd) Error: processing vignette 'rawDiag.Rmd' failed with diagnostics: error in evaluating the argument 'x' in selecting a method for function 'Reduce': argument is of length zero --- failed re-building ‘rawDiag.Rmd’ SUMMARY: processing the following file failed: ‘rawDiag.Rmd’ Error: Vignette re-building failed. Execution halted