##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data orthos
###
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* checking for file ‘orthos/DESCRIPTION’ ... OK
* preparing ‘orthos’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘orthosIntro.Rmd’ using rmarkdown
Channels:
 - conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /Users/biocbuild/Library/Caches/org.R-project.R/R/basilisk/1.17.1/orthos/1.3.0/orthos

  added / updated specs:
    - python=3.8.13


The following NEW packages will be INSTALLED:

  bzip2              conda-forge/osx-64::bzip2-1.0.8-hfdf4475_7 
  ca-certificates    conda-forge/osx-64::ca-certificates-2024.7.4-h8857fd0_0 
  libffi             conda-forge/osx-64::libffi-3.4.2-h0d85af4_5 
  libsqlite          conda-forge/osx-64::libsqlite-3.46.0-h1b8f9f3_0 
  libzlib            conda-forge/osx-64::libzlib-1.3.1-h87427d6_1 
  ncurses            conda-forge/osx-64::ncurses-6.5-h5846eda_0 
  openssl            conda-forge/osx-64::openssl-3.3.1-h87427d6_2 
  pip                conda-forge/noarch::pip-24.0-pyhd8ed1ab_0 
  python             conda-forge/osx-64::python-3.8.13-h66c20e1_0_cpython 
  readline           conda-forge/osx-64::readline-8.2-h9e318b2_1 
  setuptools         conda-forge/noarch::setuptools-71.0.4-pyhd8ed1ab_0 
  sqlite             conda-forge/osx-64::sqlite-3.46.0-h28673e1_0 
  tk                 conda-forge/osx-64::tk-8.6.13-h1abcd95_1 
  wheel              conda-forge/noarch::wheel-0.43.0-pyhd8ed1ab_1 
  xz                 conda-forge/osx-64::xz-5.2.6-h775f41a_0 


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
 - conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
    current version: 24.3.0
    latest version: 24.5.0

Please update conda by running

    $ conda update -n base -c conda-forge conda



# All requested packages already installed.

Channels:
 - conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... failed

LibMambaUnsatisfiableError: Encountered problems while solving:
  - package pandas-1.3.5-py310hdd25497_0 requires setuptools <60.0.0, but none of the providers can be installed

Could not solve for environment specs
The following packages are incompatible
├─ pandas 1.3.5**  is installable and it requires
│  └─ setuptools <60.0.0 , which can be installed;
└─ setuptools 67.7.1**  is not installable because it conflicts with any installable versions previously reported.


Quitting from lines 281-285 [unnamed-chunk-4] (orthosIntro.Rmd)
Error: processing vignette 'orthosIntro.Rmd' failed with diagnostics:
one or more Python packages failed to install [error code 1]
--- failed re-building ‘orthosIntro.Rmd’

SUMMARY: processing the following file failed:
  ‘orthosIntro.Rmd’

Error: Vignette re-building failed.
Execution halted