############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data nullranges ### ############################################################################## ############################################################################## * checking for file ‘nullranges/DESCRIPTION’ ... OK * preparing ‘nullranges’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘bootRanges.Rmd’ using rmarkdown Quitting from lines 168-183 [excluderanges] (bootRanges.Rmd) Error: processing vignette 'bootRanges.Rmd' failed with diagnostics: failed to load resource name: AH107305 title: hg38.Kundaje.GRCh38_unified_Excludable reason: unknown input format --- failed re-building ‘bootRanges.Rmd’ --- re-building ‘matchRanges.Rmd’ using rmarkdown 2024-07-24 17:47:47.590 R[89535:459254802] XType: com.apple.fonts is not accessible. 2024-07-24 17:47:47.591 R[89535:459254802] XType: XTFontStaticRegistry is enabled. --- finished re-building ‘matchRanges.Rmd’ --- re-building ‘matching_ginteractions.Rmd’ using rmarkdown --- finished re-building ‘matching_ginteractions.Rmd’ --- re-building ‘matching_granges.Rmd’ using rmarkdown --- finished re-building ‘matching_granges.Rmd’ --- re-building ‘matching_pool_set.Rmd’ using rmarkdown Quitting from lines 42-49 [unnamed-chunk-1] (matching_pool_set.Rmd) Error: processing vignette 'matching_pool_set.Rmd' failed with diagnostics: failed to load resource name: AH30743 title: E116-DNase.macs2.narrowPeak.gz reason: scan() expected 'a real', got 'C'A' --- failed re-building ‘matching_pool_set.Rmd’ --- re-building ‘nullranges.Rmd’ using rmarkdown --- finished re-building ‘nullranges.Rmd’ SUMMARY: processing the following files failed: ‘bootRanges.Rmd’ ‘matching_pool_set.Rmd’ Error: Vignette re-building failed. Execution halted