############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data miloR ### ############################################################################## ############################################################################## * checking for file ‘miloR/DESCRIPTION’ ... OK * preparing ‘miloR’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘milo_contrasts.Rmd’ using rmarkdown 2024-06-09 20:25:51.448 R[55666:463874774] XType: com.apple.fonts is not accessible. 2024-06-09 20:25:51.450 R[55666:463874774] XType: XTFontStaticRegistry is enabled. --- finished re-building ‘milo_contrasts.Rmd’ --- re-building ‘milo_demo.Rmd’ using rmarkdown --- finished re-building ‘milo_demo.Rmd’ --- re-building ‘milo_gastrulation.Rmd’ using rmarkdown Warning: ggrepel: 5 unlabeled data points (too many overlaps). Consider increasing max.overlaps Quitting from lines 433-437 [unnamed-chunk-37] (milo_gastrulation.Rmd) Error: processing vignette 'milo_gastrulation.Rmd' failed with diagnostics: error in evaluating the argument 'x' in selecting a method for function 'rowSums': incorrect number of dimensions --- failed re-building ‘milo_gastrulation.Rmd’ --- re-building ‘milo_glmm.Rmd’ using rmarkdown Warning: call dbDisconnect() when finished working with a connection --- finished re-building ‘milo_glmm.Rmd’ SUMMARY: processing the following file failed: ‘milo_gastrulation.Rmd’ Error: Vignette re-building failed. Execution halted