############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 methodical ### ############################################################################## ############################################################################## * checking for file ‘methodical/DESCRIPTION’ ... OK * preparing ‘methodical’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘calculating_methylation_transcription_correlations.Rmd’ using rmarkdown --- finished re-building ‘calculating_methylation_transcription_correlations.Rmd’ --- re-building ‘identifying_tmrs.Rmd’ using rmarkdown --- finished re-building ‘identifying_tmrs.Rmd’ --- re-building ‘working_with_meth_rses.Rmd’ using rmarkdown Quitting from lines 221-244 [unnamed-chunk-8] (working_with_meth_rses.Rmd) Error: processing vignette 'working_with_meth_rses.Rmd' failed with diagnostics: failed to load resource name: AH14108 title: hg38ToHg19.over.chain.gz reason: expected 11 elements in header, got 1, on line 1 --- failed re-building ‘working_with_meth_rses.Rmd’ SUMMARY: processing the following file failed: ‘working_with_meth_rses.Rmd’ Error: Vignette re-building failed. Execution halted