############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data metaseqR2 ### ############################################################################## ############################################################################## * checking for file ‘metaseqR2/DESCRIPTION’ ... OK * preparing ‘metaseqR2’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘metaseqr2-annotation.Rmd’ using rmarkdown trying URL 'http://hgdownload.cse.ucsc.edu/goldenPath/eboVir3/database/ncbiGene.txt.gz' Content type 'application/x-gzip' length 238 bytes ================================================== downloaded 238 bytes trying URL 'http://hgdownload.cse.ucsc.edu/goldenPath/eboVir3/database/chromInfo.txt.gz' Content type 'application/x-gzip' length 71 bytes ================================================== downloaded 71 bytes --- finished re-building ‘metaseqr2-annotation.Rmd’ --- re-building ‘metaseqr2-statistics.Rmd’ using rmarkdown Warning: call dbDisconnect() when finished working with a connection adding: home/biocbuild/tmp/Rtmp0hQhzW/test1/plots/qc/correlation_correlogram.png (deflated 2%) adding: home/biocbuild/tmp/Rtmp0hQhzW/test1/plots/qc/correlation_heatmap.png (deflated 11%) adding: home/biocbuild/tmp/Rtmp0hQhzW/test1/plots/qc/correlation_pairs.png (deflated 1%) adding: 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'https://code.highcharts.com/highcharts.js' downloaded 271 KB trying URL 'https://code.highcharts.com/highcharts-more.js' downloaded 95 KB trying URL 'https://code.highcharts.com/modules/exporting.js' downloaded 19 KB trying URL 'https://code.highcharts.com/modules/offline-exporting.js' downloaded 9830 bytes trying URL 'https://code.highcharts.com/modules/export-data.js' downloaded 12 KB trying URL 'http://jvenn.toulouse.inrae.fr/app/js/canvas2svg.js' Content type 'text/javascript' length 35122 bytes (34 KB) ================================================== downloaded 34 KB trying URL 'http://jvenn.toulouse.inrae.fr/app/js/jvenn.min.js' Quitting from lines 380-412 [example-4] (metaseqr2-statistics.Rmd) Error: processing vignette 'metaseqr2-statistics.Rmd' failed with diagnostics: cannot open URL 'http://jvenn.toulouse.inrae.fr/app/js/jvenn.min.js' --- failed re-building ‘metaseqr2-statistics.Rmd’ SUMMARY: processing the following file failed: ‘metaseqr2-statistics.Rmd’ Error: Vignette 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