############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r maftools -R && C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data maftools ### ############################################################################## ############################################################################## * checking for file 'maftools/DESCRIPTION' ... OK * preparing 'maftools': * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'cancer_hotspots.Rmd' using rmarkdown Error: processing vignette 'cancer_hotspots.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. --- failed re-building 'cancer_hotspots.Rmd' --- re-building 'cnv_analysis.Rmd' using rmarkdown Error: processing vignette 'cnv_analysis.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. --- failed re-building 'cnv_analysis.Rmd' --- re-building 'maftools.Rmd' using rmarkdown Error: processing vignette 'maftools.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. --- failed re-building 'maftools.Rmd' --- re-building 'oncoplots.Rmd' using rmarkdown Error: processing vignette 'oncoplots.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. --- failed re-building 'oncoplots.Rmd' SUMMARY: processing the following files failed: 'cancer_hotspots.Rmd' 'cnv_analysis.Rmd' 'maftools.Rmd' 'oncoplots.Rmd' Error: Vignette re-building failed. Execution halted