############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data iSEE ### ############################################################################## ############################################################################## * checking for file ‘iSEE/DESCRIPTION’ ... OK * preparing ‘iSEE’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘basic.Rmd’ using rmarkdown Quitting from lines 93-96 [allen-dataset] (basic.Rmd) Error: processing vignette 'basic.Rmd' failed with diagnostics: failed to open file at '~/Library/Caches/gypsum/bucket/scRNAseq/legacy/2023-12-18/allen/other_data/list_contents.json.gz' --- failed re-building ‘basic.Rmd’ --- re-building ‘bigdata.Rmd’ using rmarkdown Quitting from lines 81-84 [unnamed-chunk-3] (bigdata.Rmd) Error: processing vignette 'bigdata.Rmd' failed with diagnostics: failed to open file at '~/Library/Caches/gypsum/bucket/scRNAseq/legacy/2023-12-18/allen/other_data/list_contents.json.gz' --- failed re-building ‘bigdata.Rmd’ --- re-building ‘configure.Rmd’ using rmarkdown Quitting from lines 44-55 [setup] (configure.Rmd) Error: processing vignette 'configure.Rmd' failed with diagnostics: cannot open the connection --- failed re-building ‘configure.Rmd’ --- re-building ‘custom.Rmd’ using rmarkdown Quitting from lines 45-56 [setup] (custom.Rmd) Error: processing vignette 'custom.Rmd' failed with diagnostics: cannot open the connection --- failed re-building ‘custom.Rmd’ --- re-building ‘ecm.Rmd’ using rmarkdown Quitting from lines 43-54 [setup] (ecm.Rmd) Error: processing vignette 'ecm.Rmd' failed with diagnostics: cannot open the connection --- failed re-building ‘ecm.Rmd’ --- re-building ‘links.Rmd’ using rmarkdown Quitting from lines 43-54 [setup] (links.Rmd) Error: processing vignette 'links.Rmd' failed with diagnostics: cannot open the connection --- failed re-building ‘links.Rmd’ --- re-building ‘voice.Rmd’ using rmarkdown Quitting from lines 43-54 [setup] (voice.Rmd) Error: processing vignette 'voice.Rmd' failed with diagnostics: cannot open the connection --- failed re-building ‘voice.Rmd’ SUMMARY: processing the following files failed: ‘basic.Rmd’ ‘bigdata.Rmd’ ‘configure.Rmd’ ‘custom.Rmd’ ‘ecm.Rmd’ ‘links.Rmd’ ‘voice.Rmd’ Error: Vignette re-building failed. Execution halted