############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r ensembldb -R && C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data ensembldb ### ############################################################################## ############################################################################## * checking for file 'ensembldb/DESCRIPTION' ... OK * preparing 'ensembldb': * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'MySQL-backend.Rmd' using rmarkdown Error: processing vignette 'MySQL-backend.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. --- failed re-building 'MySQL-backend.Rmd' --- re-building 'coordinate-mapping-use-cases.Rmd' using rmarkdown Error: processing vignette 'coordinate-mapping-use-cases.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. --- failed re-building 'coordinate-mapping-use-cases.Rmd' --- re-building 'coordinate-mapping.Rmd' using rmarkdown Error: processing vignette 'coordinate-mapping.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. --- failed re-building 'coordinate-mapping.Rmd' --- re-building 'ensembldb.Rmd' using rmarkdown Error: processing vignette 'ensembldb.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. Error in eval(x, envir = envir) : object 'use_network' not found Error in eval(x, envir = envir) : object 'use_network' not found Error in eval(x, envir = envir) : object 'use_network' not found --- failed re-building 'ensembldb.Rmd' --- re-building 'proteins.Rmd' using rmarkdown Error: processing vignette 'proteins.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. Error in eval(x, envir = envir) : object 'evalMe' not found Error in eval(x, envir = envir) : object 'evalMe' not found Error in eval(x, envir = envir) : object 'evalMe' not found Error in eval(x, envir = envir) : object 'haveProt' not found Error in eval(x, envir = envir) : object 'haveProt' not found Error in eval(x, envir = envir) : object 'haveProt' not found Error in eval(x, envir = envir) : object 'haveProt' not found Error in eval(x, envir = envir) : object 'haveProt' not found Error in eval(x, envir = envir) : object 'haveProt' not found Error in eval(x, envir = envir) : object 'haveProt' not found Error in eval(x, envir = envir) : object 'haveProt' not found Error in eval(x, envir = envir) : object 'haveProt' not found Error in eval(x, envir = envir) : object 'haveProt' not found Error in eval(x, envir = envir) : object 'haveProt' not found Error in eval(x, envir = envir) : object 'haveProt' not found --- failed re-building 'proteins.Rmd' SUMMARY: processing the following files failed: 'MySQL-backend.Rmd' 'coordinate-mapping-use-cases.Rmd' 'coordinate-mapping.Rmd' 'ensembldb.Rmd' 'proteins.Rmd' Error: Vignette re-building failed. Execution halted