############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data destiny ### ############################################################################## ############################################################################## * checking for file ‘destiny/DESCRIPTION’ ... OK * preparing ‘destiny’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘DPT.Rmd’ using rmarkdown 2024-06-09 18:32:49.234 R[22094:460810097] XType: com.apple.fonts is not accessible. 2024-06-09 18:32:49.235 R[22094:460810097] XType: XTFontStaticRegistry is enabled. --- finished re-building ‘DPT.Rmd’ --- re-building ‘Diffusion-Map-recap.Rmd’ using rmarkdown --- finished re-building ‘Diffusion-Map-recap.Rmd’ --- re-building ‘Diffusion-Maps.Rmd’ using rmarkdown --- finished re-building ‘Diffusion-Maps.Rmd’ --- re-building ‘Gene-Relevance.Rmd’ using rmarkdown Quitting from lines 44-45 [unnamed-chunk-3] (Gene-Relevance.Rmd) Error: processing vignette 'Gene-Relevance.Rmd' failed with diagnostics: failed to open file at '~/Library/Caches/gypsum/bucket/scRNAseq/legacy/2023-12-18/allen/other_data/list_contents.json.gz' --- failed re-building ‘Gene-Relevance.Rmd’ --- re-building ‘Global-Sigma.Rmd’ using rmarkdown --- finished re-building ‘Global-Sigma.Rmd’ --- re-building ‘tidyverse.Rmd’ using rmarkdown --- finished re-building ‘tidyverse.Rmd’ SUMMARY: processing the following file failed: ‘Gene-Relevance.Rmd’ Error: Vignette re-building failed. Execution halted