############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data dce ### ############################################################################## ############################################################################## * checking for file ‘dce/DESCRIPTION’ ... OK * preparing ‘dce’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘dce.Rmd’ using rmarkdown INFO [2024-07-05 22:32:42] Processing kegg --- finished re-building ‘dce.Rmd’ --- re-building ‘pathway_databases.Rmd’ using rmarkdown INFO [2024-07-05 22:33:15] Processing pathbank Quitting from lines 64-80 [unnamed-chunk-5] (pathway_databases.Rmd) Error: processing vignette 'pathway_databases.Rmd' failed with diagnostics: ℹ In index: 1. Caused by error in `fetchRemote()`: ! cannot download pathway data: are you offline? --- failed re-building ‘pathway_databases.Rmd’ SUMMARY: processing the following file failed: ‘pathway_databases.Rmd’ Error: Vignette re-building failed. Execution halted