############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data crisprBwa ### ############################################################################## ############################################################################## * checking for file ‘crisprBwa/DESCRIPTION’ ... OK * preparing ‘crisprBwa’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘crisprBwa.Rmd’ using rmarkdown [bwa_index] Pack FASTA... 0.00 sec [bwa_index] Construct BWT for the packed sequence... [bwa_index] 0.04 seconds elapse. [bwa_index] Update BWT... 0.00 sec [bwa_index] Pack forward-only FASTA... 0.00 sec [bwa_index] Construct SA from BWT and Occ... 0.01 sec [main] Version: 0.7.17-r1198-dirty [main] CMD: /home/biocbuild/R/R-4.4.1/site-library/Rbwa/bwa index -p /home/biocbuild/tmp/Rtmp50x44j/chr12 /home/biocbuild/tmp/RtmpoY9ZM3/Rinst2180ae3858a2c9/crisprBwa/example/chr12.fa [main] Real time: 0.086 sec; CPU: 0.060 sec Quitting from lines 125-141 [unnamed-chunk-3] (crisprBwa.Rmd) Error: processing vignette 'crisprBwa.Rmd' failed with diagnostics: there is no package called 'BSgenome.Hsapiens.UCSC.hg38' --- failed re-building ‘crisprBwa.Rmd’ SUMMARY: processing the following file failed: ‘crisprBwa.Rmd’ Error: Vignette re-building failed. Execution halted