############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 beadarray ### ############################################################################## ############################################################################## * checking for file ‘beadarray/DESCRIPTION’ ... OK * preparing ‘beadarray’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘ImageProcessing.Rmd’ using rmarkdown --- finished re-building ‘ImageProcessing.Rmd’ --- re-building ‘beadarray.Rmd’ using rmarkdown xdg-open - opens a file or URL in the user's preferred application Synopsis xdg-open { file | URL } xdg-open { --help | --manual | --version } Use 'man xdg-open' or 'xdg-open --manual' for additional info. xdg-open - opens a file or URL in the user's preferred application Synopsis xdg-open { file | URL } xdg-open { --help | --manual | --version } Use 'man xdg-open' or 'xdg-open --manual' for additional info. --- finished re-building ‘beadarray.Rmd’ --- re-building ‘beadlevel.Rmd’ using rmarkdown --- finished re-building ‘beadlevel.Rmd’ --- re-building ‘beadsummary.Rmd’ using rmarkdown trying URL 'https://ftp.ncbi.nlm.nih.gov/geo/series/GSE33nnn/GSE33126/matrix/GSE33126_series_matrix.txt.gz' Content type 'application/x-gzip' length 3658664 bytes (3.5 MB) ================================================== downloaded 3.5 MB Quitting from lines 524-532 [unnamed-chunk-37] (beadsummary.Rmd) Error: processing vignette 'beadsummary.Rmd' failed with diagnostics: cannot open the connection --- failed re-building ‘beadsummary.Rmd’ SUMMARY: processing the following file failed: ‘beadsummary.Rmd’ Error: Vignette re-building failed. Execution halted