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###
### Running command:
###
###   chmod a+r arrayQualityMetrics -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data arrayQualityMetrics
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* checking for file 'arrayQualityMetrics/DESCRIPTION' ... OK
* preparing 'arrayQualityMetrics':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'aqm.Rnw' using knitr
texify: major issue: User/administrator updates are out-of-sync.
Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "",  :
  running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --quiet --pdf "aqm.tex" --max-iterations=20 -I "F:/biocbuild/bbs-3.20-bioc/R/share/texmf/tex/latex" -I "F:/biocbuild/bbs-3.20-bioc/R/share/texmf/bibtex/bst"' had status 1
Error: processing vignette 'aqm.Rnw' failed with diagnostics:
running 'texi2dvi' on 'aqm.tex' failed

LaTeX errors:
ics/vignettes/aqm.tex:74: Package xcolor Error: Undefined color `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
ics/vignettes/aqm.tex:94: Package xcolor Error: Undefined color `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
ics/vignettes/aqm.tex:115: Package xcolor Error: Undefined color `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
ics/vignettes/aqm.tex:126: Package xcolor Error: Undefined color `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
ics/vignettes/aqm.tex:154: Package xcolor Error: Undefined color `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
ics/vignettes/aqm.tex:226: Package xcolor Error: Undefined color `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              

--- failed re-building 'aqm.Rnw'

--- re-building 'arrayQualityMetrics.Rnw' using knitr
texify: major issue: User/administrator updates are out-of-sync.
Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "",  :
  running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --quiet --pdf "arrayQualityMetrics.tex" --max-iterations=20 -I "F:/biocbuild/bbs-3.20-bioc/R/share/texmf/tex/latex" -I "F:/biocbuild/bbs-3.20-bioc/R/share/texmf/bibtex/bst"' had status 1
Error: processing vignette 'arrayQualityMetrics.Rnw' failed with diagnostics:
running 'texi2dvi' on 'arrayQualityMetrics.tex' failed

LaTeX errors:
ics/vignettes/arrayQualityMetrics.tex:152: Package xcolor Error: Undefined colo
r `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ics/vignettes/arrayQualityMetrics.tex:167: Package xcolor Error: Undefined colo
r `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ics/vignettes/arrayQualityMetrics.tex:199: Package xcolor Error: Undefined colo
r `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ics/vignettes/arrayQualityMetrics.tex:209: Package xcolor Error: Undefined colo
r `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ics/vignettes/arrayQualityMetrics.tex:262: Package xcolor Error: Undefined colo
r `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ics/vignettes/arrayQualityMetrics.tex:307: Package xcolor Error: Undefined colo
r `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ics/vignettes/arrayQualityMetrics.tex:315: Package xcolor Error: Undefined colo
r `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ics/vignettes/arrayQualityMetrics.tex:355: Package xcolor Error: Undefined colo
r `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ics/vignettes/arrayQualityMetrics.tex:380: Package xcolor Error: Undefined colo
r `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ics/vignettes/arrayQualityMetrics.tex:416: Package xcolor Error: Undefined colo
r `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ics/vignettes/arrayQualityMetrics.tex:449: Package xcolor Error: Undefined colo
r `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ics/vignettes/arrayQualityMetrics.tex:463: Package xcolor Error: Undefined colo
r `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.

--- failed re-building 'arrayQualityMetrics.Rnw'

SUMMARY: processing the following files failed:
  'aqm.Rnw' 'arrayQualityMetrics.Rnw'

Error: Vignette re-building failed.
Execution halted