############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data SimBu ### ############################################################################## ############################################################################## * checking for file ‘SimBu/DESCRIPTION’ ... OK * preparing ‘SimBu’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘SimBu.Rmd’ using rmarkdown Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "Getting started", and the latter is "Getting started with SimBu". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check. --- finished re-building ‘SimBu.Rmd’ --- re-building ‘sfaira_vignette.Rmd’ using rmarkdown --- finished re-building ‘sfaira_vignette.Rmd’ --- re-building ‘simulator_scaling_factors.Rmd’ using rmarkdown --- finished re-building ‘simulator_scaling_factors.Rmd’ --- re-building ‘simulator_input_output.Rmd’ using knitr Quitting from lines 23-26 [unnamed-chunk-2] (simulator_input_output.Rmd) Error: processing vignette 'simulator_input_output.Rmd' failed with diagnostics: there is no package called 'Seurat' --- failed re-building ‘simulator_input_output.Rmd’ SUMMARY: processing the following file failed: ‘simulator_input_output.Rmd’ Error: Vignette re-building failed. Execution halted