############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r NeuCA -R && C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data NeuCA ### ############################################################################## ############################################################################## * checking for file 'NeuCA/DESCRIPTION' ... OK * preparing 'NeuCA': * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'NeuCA.Rmd' using rmarkdown 2024-07-15 19:35:31.816228: I tensorflow/core/util/port.cc:113] oneDNN custom operations are on. You may see slightly different numerical results due to floating-point round-off errors from different computation orders. To turn them off, set the environment variable `TF_ENABLE_ONEDNN_OPTS=0`. 2024-07-15 19:35:39.185421: I tensorflow/core/util/port.cc:113] oneDNN custom operations are on. You may see slightly different numerical results due to floating-point round-off errors from different computation orders. To turn them off, set the environment variable `TF_ENABLE_ONEDNN_OPTS=0`. C:\PYTHON~1\Lib\site-packages\keras\src\layers\core\dense.py:87: UserWarning: Do not pass an `input_shape`/`input_dim` argument to a layer. When using Sequential models, prefer using an `Input(shape)` object as the first layer in the model instead. super().__init__(activity_regularizer=activity_regularizer, **kwargs) Quitting from lines 76-80 [unnamed-chunk-4] (NeuCA.Rmd) Error: processing vignette 'NeuCA.Rmd' failed with diagnostics: ValueError: Only input tensors may be passed as positional arguments. The following argument value should be passed as a keyword argument: (of type ) Run `reticulate::py_last_error()` for details. --- failed re-building 'NeuCA.Rmd' SUMMARY: processing the following file failed: 'NeuCA.Rmd' Error: Vignette re-building failed. Execution halted