############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data NeuCA ### ############################################################################## ############################################################################## * checking for file ‘NeuCA/DESCRIPTION’ ... OK * preparing ‘NeuCA’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘NeuCA.Rmd’ using rmarkdown /Users/biocbuild/Library/Python/3.9/lib/python/site-packages/urllib3/__init__.py:35: NotOpenSSLWarning: urllib3 v2 only supports OpenSSL 1.1.1+, currently the 'ssl' module is compiled with 'LibreSSL 2.8.3'. See: https://github.com/urllib3/urllib3/issues/3020 warnings.warn( /Users/biocbuild/Library/Python/3.9/lib/python/site-packages/keras/src/layers/core/dense.py:88: UserWarning: Do not pass an `input_shape`/`input_dim` argument to a layer. When using Sequential models, prefer using an `Input(shape)` object as the first layer in the model instead. super().__init__(activity_regularizer=activity_regularizer, **kwargs) Quitting from lines 76-80 [unnamed-chunk-4] (NeuCA.Rmd) Error: processing vignette 'NeuCA.Rmd' failed with diagnostics: ValueError: Only input tensors may be passed as positional arguments. The following argument value should be passed as a keyword argument: (of type ) Run `reticulate::py_last_error()` for details. --- failed re-building ‘NeuCA.Rmd’ SUMMARY: processing the following file failed: ‘NeuCA.Rmd’ Error: Vignette re-building failed. Execution halted