############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data GeomxTools ### ############################################################################## ############################################################################## * checking for file ‘GeomxTools/DESCRIPTION’ ... OK * preparing ‘GeomxTools’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘Developer_Introduction_to_the_NanoStringGeoMxSet.Rmd’ using rmarkdown --- finished re-building ‘Developer_Introduction_to_the_NanoStringGeoMxSet.Rmd’ --- re-building ‘GeomxSet_coercions.Rmd’ using rmarkdown Quitting from lines 32-36 [Load Libraries] (GeomxSet_coercions.Rmd) Error: processing vignette 'GeomxSet_coercions.Rmd' failed with diagnostics: there is no package called 'Seurat' --- failed re-building ‘GeomxSet_coercions.Rmd’ --- re-building ‘Protein_in_GeomxTools.Rmd’ using rmarkdown --- finished re-building ‘Protein_in_GeomxTools.Rmd’ SUMMARY: processing the following file failed: ‘GeomxSet_coercions.Rmd’ Error: Vignette re-building failed. Execution halted