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### Running command:
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###   F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:GeneTonic.install-out.txt --library=F:\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings GeneTonic_2.9.0.tar.gz
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* using log directory 'F:/biocbuild/bbs-3.20-bioc/meat/GeneTonic.Rcheck'
* using R version 4.4.0 RC (2024-04-16 r86468 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'GeneTonic/DESCRIPTION' ... OK
* this is package 'GeneTonic' version '2.9.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'GeneTonic' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                         user system elapsed
summarize_ggs_hubgenes   7.35   1.37    8.77
gs_heatmap               6.44   1.90    7.69
gs_mds                   6.61   1.56    8.27
gs_upset                 6.71   1.38    8.08
ggs_backbone             6.24   1.49    8.61
GeneTonic                6.39   1.23    7.97
ggs_graph                5.81   1.31    7.13
gs_dendro                5.28   1.54    6.91
gs_volcano               5.28   1.36    6.64
gs_scores                5.15   1.31    6.48
distill_enrichment       5.22   1.20    6.50
signature_volcano        5.25   1.12    6.47
gs_summary_heat          4.84   1.30    6.15
gs_scoresheat            4.85   1.20    6.11
gs_radar                 4.28   1.58    5.94
gs_horizon               4.30   1.46    5.67
enrichment_map           4.32   1.36    5.68
export_for_iSEE          4.45   1.21    5.68
gs_summary_overview_pair 4.12   1.22    5.42
get_aggrscores           3.92   1.32    5.27
happy_hour               3.98   1.26    5.28
enhance_table            3.93   1.23    5.27
checkup_GeneTonic        3.94   1.19    5.22
GeneTonicList            3.86   1.17    5.13
gene_plot                3.81   1.18    5.03
gs_alluvial              3.05   1.27    5.78
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK