##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data GenProSeq
###
##############################################################################
##############################################################################


* checking for file ‘GenProSeq/DESCRIPTION’ ... OK
* preparing ‘GenProSeq’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘GenProSeq.Rmd’ using rmarkdown
/Users/biocbuild/Library/Python/3.9/lib/python/site-packages/urllib3/__init__.py:35: NotOpenSSLWarning: urllib3 v2 only supports OpenSSL 1.1.1+, currently the 'ssl' module is compiled with 'LibreSSL 2.8.3'. See: https://github.com/urllib3/urllib3/issues/3020
  warnings.warn(
/Users/biocbuild/Library/Python/3.9/lib/python/site-packages/keras/src/layers/reshaping/flatten.py:37: UserWarning: Do not pass an `input_shape`/`input_dim` argument to a layer. When using Sequential models, prefer using an `Input(shape)` object as the first layer in the model instead.
  super().__init__(**kwargs)

Quitting from lines 55-81 [unnamed-chunk-1] (GenProSeq.Rmd)
Error: processing vignette 'GenProSeq.Rmd' failed with diagnostics:
object 'combined' not found
--- failed re-building ‘GenProSeq.Rmd’

SUMMARY: processing the following file failed:
  ‘GenProSeq.Rmd’

Error: Vignette re-building failed.
Execution halted