############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r DeepTarget -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data DeepTarget ### ############################################################################## ############################################################################## * checking for file 'DeepTarget/DESCRIPTION' ... OK * preparing 'DeepTarget': * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'DeepTarget_Vignette.Rmd' using rmarkdown Quitting from lines 117-120 [Performing Pathway Analysis Based on Drug Meta Data] (DeepTarget_Vignette.Rmd) Error: processing vignette 'DeepTarget_Vignette.Rmd' failed with diagnostics: BiocParallel errors 1 remote errors, element index: 6 10 unevaluated and other errors first remote error: Error in socketConnection(port = port, server = TRUE, blocking = TRUE, : cannot open the connection --- failed re-building 'DeepTarget_Vignette.Rmd' SUMMARY: processing the following file failed: 'DeepTarget_Vignette.Rmd' Error: Vignette re-building failed. Execution halted