############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r BUSseq -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data BUSseq ### ############################################################################## ############################################################################## * checking for file 'BUSseq/DESCRIPTION' ... OK * preparing 'BUSseq': * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to process help pages * saving partial Rd database * creating vignettes ... ERROR --- re-building 'BUSseq_user_guide.Rnw' using knitr texify: major issue: User/administrator updates are out-of-sync. Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "", : running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --quiet --pdf "BUSseq_user_guide.tex" --max-iterations=20 -I "F:/biocbuild/bbs-3.20-bioc/R/share/texmf/tex/latex" -I "F:/biocbuild/bbs-3.20-bioc/R/share/texmf/bibtex/bst"' had status 1 Error: processing vignette 'BUSseq_user_guide.Rnw' failed with diagnostics: running 'texi2dvi' on 'BUSseq_user_guide.tex' failed LaTeX errors: s/BUSseq_user_guide.tex:153: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... s/BUSseq_user_guide.tex:260: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... s/BUSseq_user_guide.tex:314: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... s/BUSseq_user_guide.tex:360: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... s/BUSseq_user_guide.tex:378: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... s/BUSseq_user_guide.tex:402: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... s/BUSseq_user_guide.tex:448: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... s/BUSseq_user_guide.tex:475: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... s/BUSseq_user_guide.tex:517: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... s/BUSseq_user_guide.tex:567: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... s/BUSseq_user_guide.tex:615: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... s/BUSseq_user_guide.tex:650: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... s/BUSseq_user_guide.tex:692: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... s/BUSseq_user_guide.tex:765: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... --- failed re-building 'BUSseq_user_guide.Rnw' SUMMARY: processing the following file failed: 'BUSseq_user_guide.Rnw' Error: Vignette re-building failed. Execution halted