############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r BRGenomics -R && C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data BRGenomics ### ############################################################################## ############################################################################## * checking for file 'BRGenomics/DESCRIPTION' ... OK * preparing 'BRGenomics': * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'AnalyzingMultipleDatasets.Rmd' using rmarkdown Error: processing vignette 'AnalyzingMultipleDatasets.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. --- failed re-building 'AnalyzingMultipleDatasets.Rmd' --- re-building 'DESeq2WithGlobalPerturbations.Rmd' using rmarkdown Error: processing vignette 'DESeq2WithGlobalPerturbations.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. --- failed re-building 'DESeq2WithGlobalPerturbations.Rmd' --- re-building 'GettingStarted.Rmd' using rmarkdown Error: processing vignette 'GettingStarted.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. --- failed re-building 'GettingStarted.Rmd' --- re-building 'ImportingModifyingAnnotations.Rmd' using rmarkdown Error: processing vignette 'ImportingModifyingAnnotations.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. --- failed re-building 'ImportingModifyingAnnotations.Rmd' --- re-building 'ImportingProcessingData.Rmd' using rmarkdown Error: processing vignette 'ImportingProcessingData.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. --- failed re-building 'ImportingProcessingData.Rmd' --- re-building 'Overview.Rmd' using rmarkdown Error: processing vignette 'Overview.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. --- failed re-building 'Overview.Rmd' --- re-building 'ProfilePlotsAndBootstrapping.Rmd' using rmarkdown Error: processing vignette 'ProfilePlotsAndBootstrapping.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. --- failed re-building 'ProfilePlotsAndBootstrapping.Rmd' --- re-building 'SequenceExtraction.Rmd' using rmarkdown Error: processing vignette 'SequenceExtraction.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. --- failed re-building 'SequenceExtraction.Rmd' --- re-building 'SignalCounting.Rmd' using rmarkdown Error: processing vignette 'SignalCounting.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. --- failed re-building 'SignalCounting.Rmd' --- re-building 'SpikeInNormalization.Rmd' using rmarkdown Error: processing vignette 'SpikeInNormalization.Rmd' failed with diagnostics: Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed. --- failed re-building 'SpikeInNormalization.Rmd' SUMMARY: processing the following files failed: 'AnalyzingMultipleDatasets.Rmd' 'DESeq2WithGlobalPerturbations.Rmd' 'GettingStarted.Rmd' 'ImportingModifyingAnnotations.Rmd' 'ImportingProcessingData.Rmd' 'Overview.Rmd' 'ProfilePlotsAndBootstrapping.Rmd' 'SequenceExtraction.Rmd' 'SignalCounting.Rmd' 'SpikeInNormalization.Rmd' Error: Vignette re-building failed. Execution halted