Back to Multiple platform build/check report for BioC 3.9 experimental data

CHECK report for waveTilingData on malbec2

This page was generated on 2019-10-17 16:51:25 -0400 (Thu, 17 Oct 2019).

Package 361/371HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
waveTilingData 1.20.0
Kristof De Beuf
Snapshot Date: 2019-10-17 09:00:12 -0400 (Thu, 17 Oct 2019)
URL: https://git.bioconductor.org/packages/waveTilingData
Branch: RELEASE_3_9
Last Commit: e49a02a
Last Changed Date: 2019-05-02 11:56:26 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK [ WARNINGS ]UNNEEDED, same version exists in internal repository

Summary

Package: waveTilingData
Version: 1.20.0
Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:waveTilingData.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings waveTilingData_1.20.0.tar.gz
StartedAt: 2019-10-17 13:55:09 -0400 (Thu, 17 Oct 2019)
EndedAt: 2019-10-17 13:58:21 -0400 (Thu, 17 Oct 2019)
EllapsedTime: 191.5 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: waveTilingData.Rcheck
Warnings: 1

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:waveTilingData.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings waveTilingData_1.20.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.9-data-experiment/meat/waveTilingData.Rcheck’
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘waveTilingData/DESCRIPTION’ ... OK
* this is package ‘waveTilingData’ version ‘1.20.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘waveTilingData’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 240.9Mb
  sub-directories of 1Mb or more:
    data  240.8Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... WARNING
Found the following significant warnings:
  Warning: working directory was changed to ‘/home/biocbuild/bbs-3.9-bioc/R/library/waveTilingData/data’, resetting
Examples with CPU or elapsed time > 5s
                           user system elapsed
leafdev                  18.259  0.536  18.794
leafdevBQ                12.423  0.460  12.882
leafdevMapAndFilterTAIR9  6.173  0.099   6.273
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.9-data-experiment/meat/waveTilingData.Rcheck/00check.log’
for details.



Installation output

waveTilingData.Rcheck/00install.out

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### Running command:
###
###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL waveTilingData
###
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* installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’
* installing *source* package ‘waveTilingData’ ...
** using staged installation
** data
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (waveTilingData)

Tests output


Example timings

waveTilingData.Rcheck/waveTilingData-Ex.timings

nameusersystemelapsed
leafdev18.259 0.53618.794
leafdevBQ12.423 0.46012.882
leafdevFit0.6270.0170.643
leafdevInfCompare0.6320.0160.647
leafdevMapAndFilterTAIR96.1730.0996.273