PGPC 1.12.0
Felix Klein
| Snapshot Date: 2019-10-17 09:00:12 -0400 (Thu, 17 Oct 2019) |
| URL: https://git.bioconductor.org/packages/PGPC |
| Branch: RELEASE_3_9 |
| Last Commit: a529c75 |
| Last Changed Date: 2019-05-02 11:56:45 -0400 (Thu, 02 May 2019) |
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | [ ERROR ] | skipped | | |
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### Running command:
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### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data PGPC
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* checking for file ‘PGPC/DESCRIPTION’ ... OK
* preparing ‘PGPC’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘PGPC.Rnw’ using knitr
Loading required package: EBImage
Loading required package: imageHTS
Loading required package: cellHTS2
Loading required package: RColorBrewer
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect,
is.unsorted, lapply, mapply, match, mget, order, paste, pmax,
pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply,
setdiff, sort, table, tapply, union, unique, unsplit, which,
which.max, which.min
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Attaching package: 'Biobase'
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locfit 1.5-9.1 2013-03-22
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Attaching package: 'limma'
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plotMA
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lowess
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Quitting from lines 38-193 (./src/InteractionStarPlots.Rnw)
Quitting from lines NA-531 (./src/InteractionStarPlots.Rnw)
Error: processing vignette 'PGPC.Rnw' failed with diagnostics:
panel.grid.major should have class element_line
--- failed re-building ‘PGPC.Rnw’
/home/biocbuild/bbs-3.9-bioc/R/bin/R CMD pdflatex PGPC.tex
This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017/Debian) (preloaded format=pdflatex)
\write18 enabled.
entering extended mode
(./PGPC.tex
LaTeX2e <2017-04-15>
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No file PGPC.aux.
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! LaTeX Error: Environment knitrout undefined.
See the LaTeX manual or LaTeX Companion for explanation.
Type H for immediate help.
...
l.61 \begin{knitrout}
?
! Emergency stop.
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l.61 \begin{knitrout}
! ==> Fatal error occurred, no output PDF file produced!
Transcript written on PGPC.log.
Makefile:2: recipe for target 'all' failed
make: *** [all] Error 1
Error in tools::buildVignettes(dir = ".", tangle = TRUE) :
running 'make' failed
Execution halted