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INSTALL report for ccfindR on tokay2

This page was generated on 2019-10-16 12:41:20 -0400 (Wed, 16 Oct 2019).

Package 219/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ccfindR 1.4.2
Jun Woo
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/ccfindR
Branch: RELEASE_3_9
Last Commit: 2a0cd56
Last Changed Date: 2019-07-10 16:29:27 -0400 (Wed, 10 Jul 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: ccfindR
Version: 1.4.2
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/ccfindR_1.4.2.tar.gz && rm -rf ccfindR.buildbin-libdir && mkdir ccfindR.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ccfindR.buildbin-libdir ccfindR_1.4.2.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL ccfindR_1.4.2.zip && rm ccfindR_1.4.2.tar.gz ccfindR_1.4.2.zip
StartedAt: 2019-10-15 20:14:27 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 20:16:08 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 100.2 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/ccfindR_1.4.2.tar.gz && rm -rf ccfindR.buildbin-libdir && mkdir ccfindR.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ccfindR.buildbin-libdir ccfindR_1.4.2.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL ccfindR_1.4.2.zip && rm ccfindR_1.4.2.tar.gz ccfindR_1.4.2.zip
###
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100  332k  100  332k    0     0  1838k      0 --:--:-- --:--:-- --:--:-- 1887k

install for i386

* installing *source* package 'ccfindR' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c vbnmf_update.cpp -o vbnmf_update.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o ccfindR.dll tmp.def RcppExports.o vbnmf_update.o -lgsl -lgslcblas -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/ccfindR.buildbin-libdir/00LOCK-ccfindR/00new/ccfindR/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'ccfindR'
    finding HTML links ... done
    basis-scNMFSet-method                   html  
    basis-set-scNMFSet-method               html  
    basis-set                               html  
    basis                                   html  
    build_tree                              html  
    ccfindR                                 html  
    cell_map                                html  
    cluster_id                              html  
    coeff-scNMFSet-method                   html  
    coeff-set-scNMFSet-method               html  
    coeff-set                               html  
    coeff                                   html  
    colData-scNMFSet-method                 html  
    colData-set-scNMFSet-ANY-method         html  
    counts-scNMFSet-method                  html  
    counts-set-scNMFSet-method              html  
    dbasis-scNMFSet-method                  html  
    dbasis-set-scNMFSet-method              html  
    dbasis-set                              html  
    dbasis                                  html  
    dcoeff-scNMFSet-method                  html  
    dcoeff-set-scNMFSet-method              html  
    dcoeff-set                              html  
    dcoeff                                  html  
    factorize                               html  
    feature_map                             html  
    filter_cells                            html  
    filter_genes                            html  
    gene_map                                html  
    measure-scNMFSet-method                 html  
    measure-set-scNMFSet-method             html  
    measure-set                             html  
    measure                                 html  
    meta_gene.cv                            html  
    meta_genes                              html  
    newick                                  html  
    normalize_count                         html  
    optimal_rank                            html  
    plot_genes                              html  
    plot_tree                               html  
    finding level-2 HTML links ... done

    ranks-scNMFSet-method                   html  
    ranks-set-scNMFSet-method               html  
    ranks-set                               html  
    ranks                                   html  
    read_10x                                html  
    remove_zeros                            html  
    rename_tips                             html  
    rowData-scNMFSet-method                 html  
    rowData-set-scNMFSet-method             html  
    scNMFSet-class                          html  
    scNMFSet                                html  
    show-scNMFSet-method                    html  
    simulate_data                           html  
    simulate_whx                            html  
    subset-methods                          html  
    vb_factorize                            html  
    visualize_clusters                      html  
    write_10x                               html  
    write_meta                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'ccfindR' ...
** libs
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppEigen/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c vbnmf_update.cpp -o vbnmf_update.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o ccfindR.dll tmp.def RcppExports.o vbnmf_update.o -lgsl -lgslcblas -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/ccfindR.buildbin-libdir/ccfindR/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ccfindR' as ccfindR_1.4.2.zip
* DONE (ccfindR)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'ccfindR' successfully unpacked and MD5 sums checked