Back to Multiple platform build/check report for BioC 3.9
A[B]CDEFGHIJKLMNOPQRSTUVWXYZ

CHECK report for brainImageR on tokay2

This page was generated on 2019-01-14 11:56:20 -0500 (Mon, 14 Jan 2019).

Package 172/1651HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
brainImageR 1.1.0
Sara B Linker
Snapshot Date: 2019-01-13 16:47:20 -0500 (Sun, 13 Jan 2019)
URL: https://git.bioconductor.org/packages/brainImageR
Branch: master
Last Commit: 6bf20b6
Last Changed Date: 2018-10-30 11:54:39 -0500 (Tue, 30 Oct 2018)
malbec2 Linux (Ubuntu 18.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK [ OK ] OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK 

Summary

Package: brainImageR
Version: 1.1.0
Command: C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:brainImageR.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings brainImageR_1.1.0.tar.gz
StartedAt: 2019-01-14 01:58:47 -0500 (Mon, 14 Jan 2019)
EndedAt: 2019-01-14 01:59:48 -0500 (Mon, 14 Jan 2019)
EllapsedTime: 60.2 seconds
RetCode: 0
Status:  OK  
CheckDir: brainImageR.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:brainImageR.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings brainImageR_1.1.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.9-bioc/meat/brainImageR.Rcheck'
* using R Under development (unstable) (2019-01-10 r75962)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'brainImageR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'brainImageR' version '1.1.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'brainImageR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'runTests.R'
 OK
** running tests for arch 'x64' ...
  Running 'runTests.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

brainImageR.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/brainImageR_1.1.0.tar.gz && rm -rf brainImageR.buildbin-libdir && mkdir brainImageR.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=brainImageR.buildbin-libdir brainImageR_1.1.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL brainImageR_1.1.0.zip && rm brainImageR_1.1.0.tar.gz brainImageR_1.1.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 2095k  100 2095k    0     0  17.0M      0 --:--:-- --:--:-- --:--:-- 18.2M

install for i386

* installing *source* package 'brainImageR' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'brainImageR'
    finding HTML links ... done
    BrainMap                                html  
    Comp-class                              html  
    CreateBrain                             html  
    GetGenes                                html  
    InABA                                   html  
    PValue.onetail                          html  
    PlotBrain                               html  
    PlotEnrich                              html  
    PlotPred                                html  
    Pred-class                              html  
    RandomTissueSummary                     html  
    SpatialEnrichment                       html  
    TissueSummary                           html  
    available_areanames                     html  
    brainrange                              html  
    dat                                     html  
    hipp                                    html  
    predict_time                            html  
    reColor                                 html  
    testEnrich                              html  
    tis_in_region                           html  
    tis_set                                 html  
    vth                                     html  
    whichtissues                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'brainImageR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'brainImageR' as brainImageR_1.1.0.zip
* DONE (brainImageR)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'brainImageR' successfully unpacked and MD5 sums checked

Tests output

brainImageR.Rcheck/tests_i386/runTests.Rout


R Under development (unstable) (2019-01-10 r75962) -- "Unsuffered Consequences"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> BiocGenerics:::testPackage("brainImageR")


RUNIT TEST PROTOCOL -- Mon Jan 14 01:59:41 2019 
*********************************************** 
Number of test functions: 0 
Number of errors: 0 
Number of failures: 0 

 
1 Test Suite : 
brainImageR RUnit Tests - 0 test functions, 0 errors, 0 failures
Number of test functions: 0 
Number of errors: 0 
Number of failures: 0 
> 
> proc.time()
   user  system elapsed 
   1.21    0.09    1.29 

brainImageR.Rcheck/tests_x64/runTests.Rout


R Under development (unstable) (2019-01-10 r75962) -- "Unsuffered Consequences"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> BiocGenerics:::testPackage("brainImageR")


RUNIT TEST PROTOCOL -- Mon Jan 14 01:59:43 2019 
*********************************************** 
Number of test functions: 0 
Number of errors: 0 
Number of failures: 0 

 
1 Test Suite : 
brainImageR RUnit Tests - 0 test functions, 0 errors, 0 failures
Number of test functions: 0 
Number of errors: 0 
Number of failures: 0 
> 
> proc.time()
   user  system elapsed 
   1.03    0.15    1.18 

Example timings

brainImageR.Rcheck/examples_i386/brainImageR-Ex.timings

nameusersystemelapsed
BrainMap0.020.010.03
Comp-class000
CreateBrain0.000.020.02
GetGenes000
InABA000
PValue.onetail0.020.000.01
PlotBrain000
PlotEnrich000
PlotPred0.010.000.02
Pred-class000
RandomTissueSummary000
SpatialEnrichment000
TissueSummary000
available_areanames0.000.010.02
brainrange000
predict_time000
reColor000
testEnrich000
tis_in_region0.020.000.01
tis_set000
whichtissues000

brainImageR.Rcheck/examples_x64/brainImageR-Ex.timings

nameusersystemelapsed
BrainMap0.040.000.03
Comp-class000
CreateBrain0.000.010.01
GetGenes000
InABA000
PValue.onetail000
PlotBrain0.000.020.02
PlotEnrich000
PlotPred000
Pred-class000
RandomTissueSummary000
SpatialEnrichment0.010.000.02
TissueSummary000
available_areanames000
brainrange000
predict_time000
reColor0.000.020.01
testEnrich000
tis_in_region000
tis_set000
whichtissues000