Back to Multiple platform build/check report for BioC 3.9
A[B]CDEFGHIJKLMNOPQRSTUVWXYZ

INSTALL report for biobroom on tokay2

This page was generated on 2019-10-16 12:34:24 -0400 (Wed, 16 Oct 2019).

Package 140/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
biobroom 1.16.0
John D. Storey and Andrew J. Bass
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/biobroom
Branch: RELEASE_3_9
Last Commit: a5fe8eb
Last Changed Date: 2019-05-02 11:53:58 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: biobroom
Version: 1.16.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/biobroom_1.16.0.tar.gz && rm -rf biobroom.buildbin-libdir && mkdir biobroom.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=biobroom.buildbin-libdir biobroom_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL biobroom_1.16.0.zip && rm biobroom_1.16.0.tar.gz biobroom_1.16.0.zip
StartedAt: 2019-10-15 19:15:00 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 19:15:37 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 36.8 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/biobroom_1.16.0.tar.gz && rm -rf biobroom.buildbin-libdir && mkdir biobroom.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=biobroom.buildbin-libdir biobroom_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL biobroom_1.16.0.zip && rm biobroom_1.16.0.tar.gz biobroom_1.16.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  218k  100  218k    0     0  3357k      0 --:--:-- --:--:-- --:--:-- 3770k

install for i386

* installing *source* package 'biobroom' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'biobroom'
    finding HTML links ... done
    DESeq2_tidiers                          html  
    ExpressionSet_tidiers                   html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpuUF0iR/R.INSTALL1774327c12f5/biobroom/man/ExpressionSet_tidiers.Rd:17: file link 'assayDataElement' in package 'Biobase' does not exist and so has been treated as a topic
    GRanges_tidiers                         html  
    MSnSet_tidiers                          html  
    SummarizedExperiment_tidiers            html  
    biobroom                                html  
    edgeR_tidiers                           html  
    edge_tidiers                            html  
    hammer                                  html  
    limma_tidiers                           html  
    list_tidiers                            html  
    qvalue_tidiers                          html  
    sva_tidiers                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'biobroom' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'biobroom' as biobroom_1.16.0.zip
* DONE (biobroom)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'biobroom' successfully unpacked and MD5 sums checked