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INSTALL report for bayNorm on tokay2

This page was generated on 2019-10-16 12:42:36 -0400 (Wed, 16 Oct 2019).

Package 114/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
bayNorm 1.2.0
Wenhao Tang
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/bayNorm
Branch: RELEASE_3_9
Last Commit: d0cfb42
Last Changed Date: 2019-05-02 11:54:13 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: bayNorm
Version: 1.2.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/bayNorm_1.2.0.tar.gz && rm -rf bayNorm.buildbin-libdir && mkdir bayNorm.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=bayNorm.buildbin-libdir bayNorm_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL bayNorm_1.2.0.zip && rm bayNorm_1.2.0.tar.gz bayNorm_1.2.0.zip
StartedAt: 2019-10-15 20:14:01 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 20:15:36 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 95.5 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/bayNorm_1.2.0.tar.gz && rm -rf bayNorm.buildbin-libdir && mkdir bayNorm.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=bayNorm.buildbin-libdir bayNorm_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL bayNorm_1.2.0.zip && rm bayNorm_1.2.0.tar.gz bayNorm_1.2.0.zip
###
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100 1327k  100 1327k    0     0  18.4M      0 --:--:-- --:--:-- --:--:-- 20.2M

install for i386

* installing *source* package 'bayNorm' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppProgress/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppProgress/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c bayNorm_main.cpp -o bayNorm_main.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o bayNorm.dll tmp.def RcppExports.o bayNorm_main.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/bayNorm.buildbin-libdir/00LOCK-bayNorm/00new/bayNorm/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'bayNorm'
    finding HTML links ... done
    AdjustSIZE_fun                          html  
    BB_Fun                                  html  
    BetaFun                                 html  
    DownSampling                            html  
    EXAMPLE_DATA_list                       html  
    EstPrior                                html  
    NOISY_FUN                               html  
    Prior_fun                               html  
    SyntheticControl                        html  
    bayNorm                                 html  
    bayNorm_sup                             html  
    noisy_gene_detection                    html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'bayNorm' ...
** libs
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppProgress/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppProgress/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c bayNorm_main.cpp -o bayNorm_main.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o bayNorm.dll tmp.def RcppExports.o bayNorm_main.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/bayNorm.buildbin-libdir/bayNorm/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'bayNorm' as bayNorm_1.2.0.zip
* DONE (bayNorm)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'bayNorm' successfully unpacked and MD5 sums checked