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INSTALL report for BiocSingular on malbec2

This page was generated on 2019-10-16 12:17:25 -0400 (Wed, 16 Oct 2019).

Package 152/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BiocSingular 1.0.0
Aaron Lun
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/BiocSingular
Branch: RELEASE_3_9
Last Commit: d2b091c
Last Changed Date: 2019-05-02 11:54:14 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64 [ OK ] OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: BiocSingular
Version: 1.0.0
Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL BiocSingular
StartedAt: 2019-10-15 18:52:33 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 18:53:10 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 36.5 seconds
RetCode: 0
Status:  OK 

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL BiocSingular
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* installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’
* installing *source* package ‘BiocSingular’ ...
** using staged installation
** libs
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG  -I"/home/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.9-bioc/R/library/beachmat/include" -I/usr/local/include  -fpic  -g -O2  -Wall -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG  -I"/home/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.9-bioc/R/library/beachmat/include" -I/usr/local/include  -fpic  -g -O2  -Wall -c compute_scale.cpp -o compute_scale.o
compute_scale.cpp: In instantiation of ‘Rcpp::NumericVector compute_scale_internal(Rcpp::RObject, Rcpp::RObject) [with M = beachmat::lin_matrix >; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::RObject = Rcpp::RObject_Impl]’:
compute_scale.cpp:60:79:   required from here
compute_scale.cpp:21:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         if (numeric_centers.size()!=ncols) {
             ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
compute_scale.cpp: In instantiation of ‘Rcpp::NumericVector compute_scale_internal(Rcpp::RObject, Rcpp::RObject) [with M = beachmat::lin_matrix >; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::RObject = Rcpp::RObject_Impl]’:
compute_scale.cpp:62:79:   required from here
compute_scale.cpp:21:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.9-bioc/R/lib -L/usr/local/lib -o BiocSingular.so RcppExports.o compute_scale.o -L/home/biocbuild/bbs-3.9-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.9-bioc/R/library/00LOCK-BiocSingular/00new/BiocSingular/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BiocSingular)