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CHECK report for BiocParallel on tokay2

This page was generated on 2019-10-16 12:27:14 -0400 (Wed, 16 Oct 2019).

Package 150/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BiocParallel 1.18.1
Bioconductor Package Maintainer
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/BiocParallel
Branch: RELEASE_3_9
Last Commit: 348264a
Last Changed Date: 2019-08-06 13:19:20 -0400 (Tue, 06 Aug 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK [ OK ] OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: BiocParallel
Version: 1.18.1
Command: C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:BiocParallel.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings BiocParallel_1.18.1.tar.gz
StartedAt: 2019-10-16 02:12:54 -0400 (Wed, 16 Oct 2019)
EndedAt: 2019-10-16 02:26:46 -0400 (Wed, 16 Oct 2019)
EllapsedTime: 832.7 seconds
RetCode: 0
Status:  OK  
CheckDir: BiocParallel.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:BiocParallel.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings BiocParallel_1.18.1.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.9-bioc/meat/BiocParallel.Rcheck'
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'BiocParallel/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'BiocParallel' version '1.18.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'BiocParallel' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Unexported objects imported by ':::' calls:
  'parallel:::closeNode' 'parallel:::recvData' 'parallel:::recvOneData'
  'parallel:::sendData'
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... NOTE
Note: information on .o files for i386 is not available
Note: information on .o files for x64 is not available
File 'C:/Users/biocbuild/bbs-3.9-bioc/R/library/BiocParallel/libs/i386/BiocParallel.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
  Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
  Found 'printf', possibly from 'printf' (C)
File 'C:/Users/biocbuild/bbs-3.9-bioc/R/library/BiocParallel/libs/x64/BiocParallel.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
  Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
  Found 'printf', possibly from 'printf' (C)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs. The detected symbols are linked into the code but
might come from libraries and not actually be called.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
                      user system elapsed
bpaggregate           6.89   0.50   15.20
bpok                  2.16   0.00   14.55
ipcmutex              1.11   0.03   16.97
bpvec                 0.97   0.03    7.69
bptry                 0.97   0.02   10.48
SnowParam-class       0.79   0.04    6.45
BatchtoolsParam-class 0.69   0.13   26.36
bplapply              0.81   0.00    7.67
register              0.58   0.03    7.25
bpvectorize           0.54   0.02    7.17
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
                      user system elapsed
bpaggregate           8.11   0.27   16.84
bpok                  2.56   0.02   14.86
bpmapply              1.80   0.00    5.86
ipcmutex              1.36   0.03   17.39
bptry                 1.30   0.01   12.44
bpvec                 1.19   0.00    7.86
SnowParam-class       0.96   0.00    6.64
bplapply              0.86   0.01    7.45
BatchtoolsParam-class 0.67   0.06   18.57
register              0.70   0.00    7.55
bpvectorize           0.62   0.00    7.95
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'test.R'
 OK
** running tests for arch 'x64' ...
  Running 'test.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'C:/Users/biocbuild/bbs-3.9-bioc/meat/BiocParallel.Rcheck/00check.log'
for details.



Installation output

BiocParallel.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/BiocParallel_1.18.1.tar.gz && rm -rf BiocParallel.buildbin-libdir && mkdir BiocParallel.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BiocParallel.buildbin-libdir BiocParallel_1.18.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL BiocParallel_1.18.1.zip && rm BiocParallel_1.18.1.tar.gz BiocParallel_1.18.1.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  114k  100  114k    0     0   517k      0 --:--:-- --:--:-- --:--:--  535k

install for i386

* installing *source* package 'BiocParallel' ...
** using staged installation

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c ipcmutex.cpp -o ipcmutex.o
In file included from C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/random/detail/integer_log2.hpp:19:0,
                 from C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/random/detail/large_arithmetic.hpp:19,
                 from C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/random/detail/const_mod.hpp:23,
                 from C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/random/detail/seed_impl.hpp:26,
                 from C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/random/mersenne_twister.hpp:30,
                 from C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/uuid/random_generator.hpp:17,
                 from C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/uuid/uuid_generators.hpp:17,
                 from ipcmutex.cpp:3:
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/pending/integer_log2.hpp:7:89: note: #pragma message: This header is deprecated. Use  instead.
 BOOST_HEADER_DEPRECATED("");
                                                                                         ^
In file included from C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/container/map.hpp:30:0,
                 from C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/interprocess/sync/windows/sync_utils.hpp:37,
                 from C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/interprocess/mapped_region.hpp:50,
                 from C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/interprocess/detail/managed_open_or_create_impl.hpp:26,
                 from C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/interprocess/managed_shared_memory.hpp:26,
                 from ipcmutex.cpp:13:
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/container/detail/tree.hpp: In instantiation of 'T& boost::container::dtl::tree_node::get_data() [with T = std::pair > > >; VoidPointer = void*; boost::container::tree_type_enum tree_type_value = (boost::container::tree_type_enum)0u; bool OptimizeSize = true]':
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/container/detail/iterators.hpp:854:36:   required from 'boost::container::dtl::iterator_from_iiterator::reference boost::container::dtl::iterator_from_iiterator::operator*() const [with IIterator = boost::intrusive::tree_iterator > > >, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, false>; bool IsConst = false; boost::container::dtl::iterator_from_iiterator::reference = std::pair > > >&]'
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/container/detail/iterators.hpp:857:87:   required from 'boost::container::dtl::iterator_from_iiterator::pointer boost::container::dtl::iterator_from_iiterator::operator->() const [with IIterator = boost::intrusive::tree_iterator > > >, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, false>; bool IsConst = false; boost::container::dtl::iterator_from_iiterator::pointer = std::pair > > >*]'
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/interprocess/sync/windows/sync_utils.hpp:220:41:   required from here
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/container/detail/tree.hpp:148:56: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    {  return *reinterpret_cast(this->m_storage.data);   }
                                                        ^
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/container/detail/tree.hpp: In instantiation of 'T& boost::container::dtl::tree_node::get_data() [with T = std::pair, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>; VoidPointer = void*; boost::container::tree_type_enum tree_type_value = (boost::container::tree_type_enum)0u; bool OptimizeSize = true]':
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/container/detail/iterators.hpp:854:36:   required from 'boost::container::dtl::iterator_from_iiterator::reference boost::container::dtl::iterator_from_iiterator::operator*() const [with IIterator = boost::intrusive::tree_iterator, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, false>; bool IsConst = false; boost::container::dtl::iterator_from_iiterator::reference = std::pair, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>&]'
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/container/detail/iterators.hpp:857:87:   required from 'boost::container::dtl::iterator_from_iiterator::pointer boost::container::dtl::iterator_from_iiterator::operator->() const [with IIterator = boost::intrusive::tree_iterator, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, false>; bool IsConst = false; boost::container::dtl::iterator_from_iiterator::pointer = std::pair, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>*]'
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/interprocess/detail/windows_intermodule_singleton.hpp:192:20:   required from here
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/container/detail/tree.hpp:148:56: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/container/detail/tree.hpp: In instantiation of 'boost::container::dtl::tree_node::~tree_node() [with T = std::pair, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>; VoidPointer = void*; boost::container::tree_type_enum tree_type_value = (boost::container::tree_type_enum)0u; bool OptimizeSize = true]':
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/container/allocator_traits.hpp:394:7:   required from 'static void boost::container::allocator_traits::priv_destroy(boost::move_detail::false_type, Allocator&, T*) [with T = boost::container::dtl::tree_node, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>; Allocator = boost::container::new_allocator, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true> >; boost::move_detail::false_type = boost::move_detail::integral_constant]'
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/container/allocator_traits.hpp:322:48:   required from 'static void boost::container::allocator_traits::destroy(Allocator&, T*) [with T = boost::container::dtl::tree_node, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>; Allocator = boost::container::new_allocator, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true> >]'
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/container/detail/destroyers.hpp:155:77:   required from 'boost::container::dtl::scoped_destroy_deallocator::~scoped_destroy_deallocator() [with Allocator = boost::container::new_allocator, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true> >]'
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/container/detail/tree.hpp:947:88:   required from 'boost::container::dtl::tree::iterator boost::container::dtl::tree::insert_unique_commit(MovableConvertible&&, boost::container::dtl::tree::insert_commit_data&) [with MovableConvertible = std::pair, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>; T = std::pair, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>; KeyOfValue = boost::container::dtl::select1st, boost::container::new_allocator > >; Compare = std::less, boost::container::new_allocator > >; Allocator = boost::container::new_allocator, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr> >; Options = void; boost::container::dtl::tree::iterator = boost::container::dtl::iterator_from_iiterator, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, false>, false>; typename boost::container::dtl::intrusive_tree_type::pointer, Compare, KeyOfValue>, typename boost::container::dtl::get_tree_opt::type:: tree_type, typename boost::container::dtl::get_tree_opt::type:: optimize_size>::type::iterator = boost::intrusive::tree_iterator, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, false>; boost::container::dtl::tree::insert_commit_data = boost::intrusive::insert_commit_data_t*>]'
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/container/detail/tree.hpp:960:20:   required from 'std::pair::pointer, Compare, KeyOfValue>, typename boost::container::dtl::get_tree_opt::type:: tree_type, typename boost::container::dtl::get_tree_opt::type:: optimize_size>::type::iterator, false>, bool> boost::container::dtl::tree::insert_unique(MovableConvertible&&) [with MovableConvertible = std::pair, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>; T = std::pair, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>; KeyOfValue = boost::container::dtl::select1st, boost::container::new_allocator > >; Compare = std::less, boost::container::new_allocator > >; Allocator = boost::container::new_allocator, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr> >; Options = void; typename boost::container::dtl::intrusive_tree_type::pointer, Compare, KeyOfValue>, typename boost::container::dtl::get_tree_opt::type:: tree_type, typename boost::container::dtl::get_tree_opt::type:: optimize_size>::type::iterator = boost::intrusive::tree_iterator, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, false>]'
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/container/map.hpp:735:55:   required from 'std::pair, boost::container::dtl::select1st, Compare, Allocator, Options>::iterator, bool> boost::container::map::insert(boost::container::map::value_type&&) [with Key = boost::container::basic_string, boost::container::new_allocator >; T = boost::interprocess::ipcdetail::ref_count_ptr; Compare = std::less, boost::container::new_allocator > >; Allocator = boost::container::new_allocator, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr> >; Options = void; typename boost::container::dtl::tree, boost::container::dtl::select1st, Compare, Allocator, Options>::iterator = boost::container::dtl::iterator_from_iiterator, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, false>, false>; boost::container::map::value_type = std::pair, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>]'
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/interprocess/detail/windows_intermodule_singleton.hpp:203:99:   required from here
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/container/detail/tree.hpp:172:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    {  reinterpret_cast(this->m_storage.data)->~internal_type();  }
       ^
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/container/detail/tree.hpp: In instantiation of 'const T& boost::container::dtl::tree_node::get_data() const [with T = std::pair, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>; VoidPointer = void*; boost::container::tree_type_enum tree_type_value = (boost::container::tree_type_enum)0u; bool OptimizeSize = true]':
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/container/detail/tree.hpp:443:41:   required from 'static const key_type& boost::container::dtl::key_node_compare::key_from(const boost::container::dtl::tree_node&) [with T = std::pair, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>; VoidPointer = void*; boost::container::tree_type_enum tree_type_value = (boost::container::tree_type_enum)0u; bool OptimizeSize = true; KeyCompare = std::less, boost::container::new_allocator > >; KeyOfValue = boost::container::dtl::select1st, boost::container::new_allocator > >; boost::container::dtl::key_node_compare::key_type = boost::container::basic_string, boost::container::new_allocator >]'
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/container/detail/tree.hpp:464:60:   required from 'bool boost::container::dtl::key_node_compare::operator()(const key_type&, const U&) const [with U = boost::container::dtl::tree_node, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>; KeyCompare = std::less, boost::container::new_allocator > >; KeyOfValue = boost::container::dtl::select1st, boost::container::new_allocator > >; boost::container::dtl::key_node_compare::key_type = boost::container::basic_string, boost::container::new_allocator >]'
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/intrusive/detail/tree_value_compare.hpp:180:44:   required from 'Ret boost::intrusive::tree_value_compare::operator()(const U&, const key_type&, typename boost::intrusive::disable_if_smartref_to::type*) const [with U = boost::container::basic_string, boost::container::new_allocator >; ValuePtr = boost::container::dtl::tree_node, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>*; KeyCompare = boost::container::dtl::key_node_compare, boost::container::new_allocator > >, boost::container::dtl::select1st, boost::container::new_allocator > > >; KeyOfValue = boost::move_detail::identity, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true> >; Ret = bool; boost::intrusive::tree_value_compare::key_type = boost::container::dtl::tree_node, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>; typename boost::intrusive::disable_if_smartref_to::type = void]'
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/intrusive/detail/key_nodeptr_comp.hpp:110:19:   required from 'bool boost::intrusive::detail::key_nodeptr_comp::operator()(const T1&, const T2&, typename boost::move_detail::enable_if_c<((! boost::intrusive::detail::key_nodeptr_comp::is_same_or_nodeptr_convertible::value) && boost::intrusive::detail::key_nodeptr_comp::is_same_or_nodeptr_convertible::value), boost::intrusive::detail::key_nodeptr_comp::sfinae_type*>::type) const [with T1 = boost::container::basic_string, boost::container::new_allocator >; T2 = boost::intrusive::compact_rbtree_node*; KeyTypeKeyCompare = boost::container::dtl::key_node_compare, boost::container::new_allocator > >, boost::container::dtl::select1st, boost::container::new_allocator > > >; ValueTraits = boost::intrusive::bhtraits, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>; KeyOfValue = boost::move_detail::identity, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true> >; typename boost::move_detail::enable_if_c<((! boost::intrusive::detail::key_nodeptr_comp::is_same_or_nodeptr_convertible::value) && boost::intrusive::detail::key_nodeptr_comp::is_same_or_nodeptr_convertible::value), boost::intrusive::detail::key_nodeptr_comp::sfinae_type*>::type = boost::intrusive::detail::key_nodeptr_comp, boost::container::new_allocator > >, boost::container::dtl::select1st, boost::container::new_allocator > > >, boost::intrusive::bhtraits, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, boost::move_detail::identity, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true> > >::sfinae_type*]'
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/intrusive/bstree_algorithms.hpp:755:38:   required from 'static boost::intrusive::bstree_algorithms::node_ptr boost::intrusive::bstree_algorithms::find(const const_node_ptr&, const KeyType&, KeyNodePtrCompare) [with KeyType = boost::container::basic_string, boost::container::new_allocator >; KeyNodePtrCompare = boost::intrusive::detail::key_nodeptr_comp, boost::container::new_allocator > >, boost::container::dtl::select1st, boost::container::new_allocator > > >, boost::intrusive::bhtraits, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, boost::move_detail::identity, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true> > >; NodeTraits = boost::intrusive::rbtree_node_traits; boost::intrusive::bstree_algorithms::node_ptr = boost::intrusive::compact_rbtree_node*; boost::intrusive::bstree_algorithms::const_node_ptr = const boost::intrusive::compact_rbtree_node*]'
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/intrusive/bstree.hpp:383:83:   required from 'boost::intrusive::bstbase2::iterator boost::intrusive::bstbase2::find(const KeyType&, KeyTypeKeyCompare) [with KeyType = boost::container::basic_string, boost::container::new_allocator >; KeyTypeKeyCompare = boost::container::dtl::key_node_compare, boost::container::new_allocator > >, boost::container::dtl::select1st, boost::container::new_allocator > > >; ValueTraits = boost::intrusive::bhtraits, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>; VoidOrKeyOfValue = void; VoidOrKeyComp = boost::container::value_to_node_compare, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::tree_value_compare, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>*, std::less, boost::container::new_allocator > >, boost::container::dtl::select1st, boost::container::new_allocator > >, bool, false>, bool>; boost::intrusive::algo_types AlgoType = (boost::intrusive::algo_types)5u; HeaderHolder = void; boost::intrusive::bstbase2::iterator = boost::intrusive::tree_iterator, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, false>]'
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/container/detail/tree.hpp:1301:72:   required from 'boost::container::dtl::tree::iterator boost::container::dtl::tree::find(const key_type&) [with T = std::pair, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>; KeyOfValue = boost::container::dtl::select1st, boost::container::new_allocator > >; Compare = std::less, boost::container::new_allocator > >; Allocator = boost::container::new_allocator, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr> >; Options = void; boost::container::dtl::tree::iterator = boost::container::dtl::iterator_from_iiterator, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, false>, false>; typename boost::container::dtl::intrusive_tree_type::pointer, Compare, KeyOfValue>, typename boost::container::dtl::get_tree_opt::type:: tree_type, typename boost::container::dtl::get_tree_opt::type:: optimize_size>::type::iterator = boost::intrusive::tree_iterator, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, false>; boost::container::dtl::tree::key_type = boost::container::basic_string, boost::container::new_allocator >]'
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/interprocess/detail/windows_intermodule_singleton.hpp:190:70:   required from here
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/container/detail/tree.hpp:151:62: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    {  return *reinterpret_cast(this->m_storage.data);  }
                                                              ^
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/container/detail/tree.hpp: In instantiation of 'const T& boost::container::dtl::tree_node::get_data() const [with T = std::pair > > >; VoidPointer = void*; boost::container::tree_type_enum tree_type_value = (boost::container::tree_type_enum)0u; bool OptimizeSize = true]':
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/container/detail/tree.hpp:443:41:   required from 'static const key_type& boost::container::dtl::key_node_compare::key_from(const boost::container::dtl::tree_node&) [with T = std::pair > > >; VoidPointer = void*; boost::container::tree_type_enum tree_type_value = (boost::container::tree_type_enum)0u; bool OptimizeSize = true; KeyCompare = boost::interprocess::ipcdetail::sync_handles::address_less; KeyOfValue = boost::container::dtl::select1st; boost::container::dtl::key_node_compare::key_type = const boost::interprocess::ipcdetail::sync_id*]'
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/container/detail/tree.hpp:468:60:   required from 'bool boost::container::dtl::key_node_compare::operator()(const U&, const key_type&) const [with U = boost::container::dtl::tree_node > > >, void*, (boost::container::tree_type_enum)0u, true>; KeyCompare = boost::interprocess::ipcdetail::sync_handles::address_less; KeyOfValue = boost::container::dtl::select1st; boost::container::dtl::key_node_compare::key_type = const boost::interprocess::ipcdetail::sync_id*]'
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/intrusive/detail/tree_value_compare.hpp:175:44:   required from 'Ret boost::intrusive::tree_value_compare::operator()(const key_type&, const U&, typename boost::intrusive::disable_if_smartref_to::type*) const [with U = const boost::interprocess::ipcdetail::sync_id*; ValuePtr = boost::container::dtl::tree_node > > >, void*, (boost::container::tree_type_enum)0u, true>*; KeyCompare = boost::container::dtl::key_node_compare >; KeyOfValue = boost::move_detail::identity > > >, void*, (boost::container::tree_type_enum)0u, true> >; Ret = bool; boost::intrusive::tree_value_compare::key_type = boost::container::dtl::tree_node > > >, void*, (boost::container::tree_type_enum)0u, true>; typename boost::intrusive::disable_if_smartref_to::type = void]'
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/intrusive/detail/key_nodeptr_comp.hpp:104:19:   required from 'bool boost::intrusive::detail::key_nodeptr_comp::operator()(const T1&, const T2&, typename boost::move_detail::enable_if_c<(boost::intrusive::detail::key_nodeptr_comp::is_same_or_nodeptr_convertible::value && (! boost::intrusive::detail::key_nodeptr_comp::is_same_or_nodeptr_convertible::value)), boost::intrusive::detail::key_nodeptr_comp::sfinae_type*>::type) const [with T1 = boost::intrusive::compact_rbtree_node*; T2 = const boost::interprocess::ipcdetail::sync_id*; KeyTypeKeyCompare = boost::container::dtl::key_node_compare >; ValueTraits = boost::intrusive::bhtraits > > >, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>; KeyOfValue = boost::move_detail::identity > > >, void*, (boost::container::tree_type_enum)0u, true> >; typename boost::move_detail::enable_if_c<(boost::intrusive::detail::key_nodeptr_comp::is_same_or_nodeptr_convertible::value && (! boost::intrusive::detail::key_nodeptr_comp::is_same_or_nodeptr_convertible::value)), boost::intrusive::detail::key_nodeptr_comp::sfinae_type*>::type = boost::intrusive::detail::key_nodeptr_comp >, boost::intrusive::bhtraits > > >, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, boost::move_detail::identity > > >, void*, (boost::container::tree_type_enum)0u, true> > >::sfinae_type*]'
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/intrusive/bstree_algorithms.hpp:2028:24:   required from 'static boost::intrusive::bstree_algorithms::node_ptr boost::intrusive::bstree_algorithms::lower_bound_loop(boost::intrusive::bstree_algorithms::node_ptr, boost::intrusive::bstree_algorithms::node_ptr, const KeyType&, KeyNodePtrCompare) [with KeyType = const boost::interprocess::ipcdetail::sync_id*; KeyNodePtrCompare = boost::intrusive::detail::key_nodeptr_comp >, boost::intrusive::bhtraits > > >, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, boost::move_detail::identity > > >, void*, (boost::container::tree_type_enum)0u, true> > >; NodeTraits = boost::intrusive::rbtree_node_traits; boost::intrusive::bstree_algorithms::node_ptr = boost::intrusive::compact_rbtree_node*]'
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/intrusive/bstree_algorithms.hpp:920:96:   required from 'static boost::intrusive::bstree_algorithms::node_ptr boost::intrusive::bstree_algorithms::lower_bound(const const_node_ptr&, const KeyType&, KeyNodePtrCompare) [with KeyType = const boost::interprocess::ipcdetail::sync_id*; KeyNodePtrCompare = boost::intrusive::detail::key_nodeptr_comp >, boost::intrusive::bhtraits > > >, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, boost::move_detail::identity > > >, void*, (boost::container::tree_type_enum)0u, true> > >; NodeTraits = boost::intrusive::rbtree_node_traits; boost::intrusive::bstree_algorithms::node_ptr = boost::intrusive::compact_rbtree_node*; boost::intrusive::bstree_algorithms::const_node_ptr = const boost::intrusive::compact_rbtree_node*]'
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/intrusive/bstree.hpp:334:61:   required from 'boost::intrusive::bstbase2::iterator boost::intrusive::bstbase2::lower_bound(const KeyType&, KeyTypeKeyCompare) [with KeyType = const boost::interprocess::ipcdetail::sync_id*; KeyTypeKeyCompare = boost::container::dtl::key_node_compare >; ValueTraits = boost::intrusive::bhtraits > > >, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>; VoidOrKeyOfValue = void; VoidOrKeyComp = boost::container::value_to_node_compare > > >, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::tree_value_compare > > >*, boost::interprocess::ipcdetail::sync_handles::address_less, boost::container::dtl::select1st, bool, false>, bool>; boost::intrusive::algo_types AlgoType = (boost::intrusive::algo_types)5u; HeaderHolder = void; boost::intrusive::bstbase2::iterator = boost::intrusive::tree_iterator > > >, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, false>]'
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/container/detail/tree.hpp:1337:79:   required from 'boost::container::dtl::tree::iterator boost::container::dtl::tree::lower_bound(const key_type&) [with T = std::pair > > >; KeyOfValue = boost::container::dtl::select1st; Compare = boost::interprocess::ipcdetail::sync_handles::address_less; Allocator = boost::container::new_allocator > > > >; Options = void; boost::container::dtl::tree::iterator = boost::container::dtl::iterator_from_iiterator > > >, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, false>, false>; typename boost::container::dtl::intrusive_tree_type::pointer, Compare, KeyOfValue>, typename boost::container::dtl::get_tree_opt::type:: tree_type, typename boost::container::dtl::get_tree_opt::type:: optimize_size>::type::iterator = boost::intrusive::tree_iterator > > >, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, false>; boost::container::dtl::tree::key_type = const boost::interprocess::ipcdetail::sync_id*]'
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/interprocess/sync/windows/sync_utils.hpp:217:56:   required from here
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/container/detail/tree.hpp:151:62: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o BiocParallel.dll tmp.def ipcmutex.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/BiocParallel.buildbin-libdir/00LOCK-BiocParallel/00new/BiocParallel/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'BiocParallel'
    finding HTML links ... done
    BatchJobsParam-class                    html  
    BatchtoolsParam-class                   html  
    BiocParallel-package                    html  
    BiocParallelParam-class                 html  
    DeveloperInterface                      html  
    DoparParam-class                        html  
    MulticoreParam-class                    html  
    SerialParam-class                       html  
    SnowParam-class                         html  
    bpaggregate                             html  
    bpiterate                               html  
    bplapply                                html  
    bploop                                  html  
    bpmapply                                html  
    bpok                                    html  
    bpschedule                              html  
    bptry                                   html  
    bpvalidate                              html  
    bpvec                                   html  
    bpvectorize                             html  
    ipcmutex                                html  
    register                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'BiocParallel' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c ipcmutex.cpp -o ipcmutex.o
In file included from C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/random/detail/integer_log2.hpp:19:0,
                 from C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/random/detail/large_arithmetic.hpp:19,
                 from C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/random/detail/const_mod.hpp:23,
                 from C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/random/detail/seed_impl.hpp:26,
                 from C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/random/mersenne_twister.hpp:30,
                 from C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/uuid/random_generator.hpp:17,
                 from C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/uuid/uuid_generators.hpp:17,
                 from ipcmutex.cpp:3:
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/pending/integer_log2.hpp:7:89: note: #pragma message: This header is deprecated. Use  instead.
 BOOST_HEADER_DEPRECATED("");
                                                                                         ^
In file included from C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/container/map.hpp:30:0,
                 from C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/interprocess/sync/windows/sync_utils.hpp:37,
                 from C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/interprocess/mapped_region.hpp:50,
                 from C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/interprocess/detail/managed_open_or_create_impl.hpp:26,
                 from C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/interprocess/managed_shared_memory.hpp:26,
                 from ipcmutex.cpp:13:
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/container/detail/tree.hpp: In instantiation of 'T& boost::container::dtl::tree_node::get_data() [with T = std::pair > > >; VoidPointer = void*; boost::container::tree_type_enum tree_type_value = (boost::container::tree_type_enum)0u; bool OptimizeSize = true]':
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/container/detail/iterators.hpp:854:36:   required from 'boost::container::dtl::iterator_from_iiterator::reference boost::container::dtl::iterator_from_iiterator::operator*() const [with IIterator = boost::intrusive::tree_iterator > > >, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, false>; bool IsConst = false; boost::container::dtl::iterator_from_iiterator::reference = std::pair > > >&]'
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/container/detail/iterators.hpp:857:87:   required from 'boost::container::dtl::iterator_from_iiterator::pointer boost::container::dtl::iterator_from_iiterator::operator->() const [with IIterator = boost::intrusive::tree_iterator > > >, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, false>; bool IsConst = false; boost::container::dtl::iterator_from_iiterator::pointer = std::pair > > >*]'
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/interprocess/sync/windows/sync_utils.hpp:220:41:   required from here
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/container/detail/tree.hpp:148:56: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    {  return *reinterpret_cast(this->m_storage.data);   }
                                                        ^
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/container/detail/tree.hpp: In instantiation of 'T& boost::container::dtl::tree_node::get_data() [with T = std::pair, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>; VoidPointer = void*; boost::container::tree_type_enum tree_type_value = (boost::container::tree_type_enum)0u; bool OptimizeSize = true]':
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/container/detail/iterators.hpp:854:36:   required from 'boost::container::dtl::iterator_from_iiterator::reference boost::container::dtl::iterator_from_iiterator::operator*() const [with IIterator = boost::intrusive::tree_iterator, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, false>; bool IsConst = false; boost::container::dtl::iterator_from_iiterator::reference = std::pair, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>&]'
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/container/detail/iterators.hpp:857:87:   required from 'boost::container::dtl::iterator_from_iiterator::pointer boost::container::dtl::iterator_from_iiterator::operator->() const [with IIterator = boost::intrusive::tree_iterator, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, false>; bool IsConst = false; boost::container::dtl::iterator_from_iiterator::pointer = std::pair, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>*]'
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/interprocess/detail/windows_intermodule_singleton.hpp:192:20:   required from here
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/container/detail/tree.hpp:148:56: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/container/detail/tree.hpp: In instantiation of 'boost::container::dtl::tree_node::~tree_node() [with T = std::pair, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>; VoidPointer = void*; boost::container::tree_type_enum tree_type_value = (boost::container::tree_type_enum)0u; bool OptimizeSize = true]':
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/container/allocator_traits.hpp:394:7:   required from 'static void boost::container::allocator_traits::priv_destroy(boost::move_detail::false_type, Allocator&, T*) [with T = boost::container::dtl::tree_node, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>; Allocator = boost::container::new_allocator, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true> >; boost::move_detail::false_type = boost::move_detail::integral_constant]'
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/container/allocator_traits.hpp:322:48:   required from 'static void boost::container::allocator_traits::destroy(Allocator&, T*) [with T = boost::container::dtl::tree_node, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>; Allocator = boost::container::new_allocator, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true> >]'
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/container/detail/destroyers.hpp:155:77:   required from 'boost::container::dtl::scoped_destroy_deallocator::~scoped_destroy_deallocator() [with Allocator = boost::container::new_allocator, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true> >]'
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/container/detail/tree.hpp:947:88:   required from 'boost::container::dtl::tree::iterator boost::container::dtl::tree::insert_unique_commit(MovableConvertible&&, boost::container::dtl::tree::insert_commit_data&) [with MovableConvertible = std::pair, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>; T = std::pair, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>; KeyOfValue = boost::container::dtl::select1st, boost::container::new_allocator > >; Compare = std::less, boost::container::new_allocator > >; Allocator = boost::container::new_allocator, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr> >; Options = void; boost::container::dtl::tree::iterator = boost::container::dtl::iterator_from_iiterator, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, false>, false>; typename boost::container::dtl::intrusive_tree_type::pointer, Compare, KeyOfValue>, typename boost::container::dtl::get_tree_opt::type:: tree_type, typename boost::container::dtl::get_tree_opt::type:: optimize_size>::type::iterator = boost::intrusive::tree_iterator, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, false>; boost::container::dtl::tree::insert_commit_data = boost::intrusive::insert_commit_data_t*>]'
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/container/detail/tree.hpp:960:20:   required from 'std::pair::pointer, Compare, KeyOfValue>, typename boost::container::dtl::get_tree_opt::type:: tree_type, typename boost::container::dtl::get_tree_opt::type:: optimize_size>::type::iterator, false>, bool> boost::container::dtl::tree::insert_unique(MovableConvertible&&) [with MovableConvertible = std::pair, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>; T = std::pair, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>; KeyOfValue = boost::container::dtl::select1st, boost::container::new_allocator > >; Compare = std::less, boost::container::new_allocator > >; Allocator = boost::container::new_allocator, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr> >; Options = void; typename boost::container::dtl::intrusive_tree_type::pointer, Compare, KeyOfValue>, typename boost::container::dtl::get_tree_opt::type:: tree_type, typename boost::container::dtl::get_tree_opt::type:: optimize_size>::type::iterator = boost::intrusive::tree_iterator, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, false>]'
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/container/map.hpp:735:55:   required from 'std::pair, boost::container::dtl::select1st, Compare, Allocator, Options>::iterator, bool> boost::container::map::insert(boost::container::map::value_type&&) [with Key = boost::container::basic_string, boost::container::new_allocator >; T = boost::interprocess::ipcdetail::ref_count_ptr; Compare = std::less, boost::container::new_allocator > >; Allocator = boost::container::new_allocator, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr> >; Options = void; typename boost::container::dtl::tree, boost::container::dtl::select1st, Compare, Allocator, Options>::iterator = boost::container::dtl::iterator_from_iiterator, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, false>, false>; boost::container::map::value_type = std::pair, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>]'
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/interprocess/detail/windows_intermodule_singleton.hpp:203:99:   required from here
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/container/detail/tree.hpp:172:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    {  reinterpret_cast(this->m_storage.data)->~internal_type();  }
       ^
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/container/detail/tree.hpp: In instantiation of 'const T& boost::container::dtl::tree_node::get_data() const [with T = std::pair, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>; VoidPointer = void*; boost::container::tree_type_enum tree_type_value = (boost::container::tree_type_enum)0u; bool OptimizeSize = true]':
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/container/detail/tree.hpp:443:41:   required from 'static const key_type& boost::container::dtl::key_node_compare::key_from(const boost::container::dtl::tree_node&) [with T = std::pair, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>; VoidPointer = void*; boost::container::tree_type_enum tree_type_value = (boost::container::tree_type_enum)0u; bool OptimizeSize = true; KeyCompare = std::less, boost::container::new_allocator > >; KeyOfValue = boost::container::dtl::select1st, boost::container::new_allocator > >; boost::container::dtl::key_node_compare::key_type = boost::container::basic_string, boost::container::new_allocator >]'
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/container/detail/tree.hpp:464:60:   required from 'bool boost::container::dtl::key_node_compare::operator()(const key_type&, const U&) const [with U = boost::container::dtl::tree_node, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>; KeyCompare = std::less, boost::container::new_allocator > >; KeyOfValue = boost::container::dtl::select1st, boost::container::new_allocator > >; boost::container::dtl::key_node_compare::key_type = boost::container::basic_string, boost::container::new_allocator >]'
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/intrusive/detail/tree_value_compare.hpp:180:44:   required from 'Ret boost::intrusive::tree_value_compare::operator()(const U&, const key_type&, typename boost::intrusive::disable_if_smartref_to::type*) const [with U = boost::container::basic_string, boost::container::new_allocator >; ValuePtr = boost::container::dtl::tree_node, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>*; KeyCompare = boost::container::dtl::key_node_compare, boost::container::new_allocator > >, boost::container::dtl::select1st, boost::container::new_allocator > > >; KeyOfValue = boost::move_detail::identity, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true> >; Ret = bool; boost::intrusive::tree_value_compare::key_type = boost::container::dtl::tree_node, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>; typename boost::intrusive::disable_if_smartref_to::type = void]'
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/intrusive/detail/key_nodeptr_comp.hpp:110:19:   required from 'bool boost::intrusive::detail::key_nodeptr_comp::operator()(const T1&, const T2&, typename boost::move_detail::enable_if_c<((! boost::intrusive::detail::key_nodeptr_comp::is_same_or_nodeptr_convertible::value) && boost::intrusive::detail::key_nodeptr_comp::is_same_or_nodeptr_convertible::value), boost::intrusive::detail::key_nodeptr_comp::sfinae_type*>::type) const [with T1 = boost::container::basic_string, boost::container::new_allocator >; T2 = boost::intrusive::compact_rbtree_node*; KeyTypeKeyCompare = boost::container::dtl::key_node_compare, boost::container::new_allocator > >, boost::container::dtl::select1st, boost::container::new_allocator > > >; ValueTraits = boost::intrusive::bhtraits, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>; KeyOfValue = boost::move_detail::identity, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true> >; typename boost::move_detail::enable_if_c<((! boost::intrusive::detail::key_nodeptr_comp::is_same_or_nodeptr_convertible::value) && boost::intrusive::detail::key_nodeptr_comp::is_same_or_nodeptr_convertible::value), boost::intrusive::detail::key_nodeptr_comp::sfinae_type*>::type = boost::intrusive::detail::key_nodeptr_comp, boost::container::new_allocator > >, boost::container::dtl::select1st, boost::container::new_allocator > > >, boost::intrusive::bhtraits, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, boost::move_detail::identity, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true> > >::sfinae_type*]'
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/intrusive/bstree_algorithms.hpp:755:38:   required from 'static boost::intrusive::bstree_algorithms::node_ptr boost::intrusive::bstree_algorithms::find(const const_node_ptr&, const KeyType&, KeyNodePtrCompare) [with KeyType = boost::container::basic_string, boost::container::new_allocator >; KeyNodePtrCompare = boost::intrusive::detail::key_nodeptr_comp, boost::container::new_allocator > >, boost::container::dtl::select1st, boost::container::new_allocator > > >, boost::intrusive::bhtraits, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, boost::move_detail::identity, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true> > >; NodeTraits = boost::intrusive::rbtree_node_traits; boost::intrusive::bstree_algorithms::node_ptr = boost::intrusive::compact_rbtree_node*; boost::intrusive::bstree_algorithms::const_node_ptr = const boost::intrusive::compact_rbtree_node*]'
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/intrusive/bstree.hpp:383:83:   required from 'boost::intrusive::bstbase2::iterator boost::intrusive::bstbase2::find(const KeyType&, KeyTypeKeyCompare) [with KeyType = boost::container::basic_string, boost::container::new_allocator >; KeyTypeKeyCompare = boost::container::dtl::key_node_compare, boost::container::new_allocator > >, boost::container::dtl::select1st, boost::container::new_allocator > > >; ValueTraits = boost::intrusive::bhtraits, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>; VoidOrKeyOfValue = void; VoidOrKeyComp = boost::container::value_to_node_compare, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::tree_value_compare, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>*, std::less, boost::container::new_allocator > >, boost::container::dtl::select1st, boost::container::new_allocator > >, bool, false>, bool>; boost::intrusive::algo_types AlgoType = (boost::intrusive::algo_types)5u; HeaderHolder = void; boost::intrusive::bstbase2::iterator = boost::intrusive::tree_iterator, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, false>]'
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/container/detail/tree.hpp:1301:72:   required from 'boost::container::dtl::tree::iterator boost::container::dtl::tree::find(const key_type&) [with T = std::pair, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>; KeyOfValue = boost::container::dtl::select1st, boost::container::new_allocator > >; Compare = std::less, boost::container::new_allocator > >; Allocator = boost::container::new_allocator, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr> >; Options = void; boost::container::dtl::tree::iterator = boost::container::dtl::iterator_from_iiterator, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, false>, false>; typename boost::container::dtl::intrusive_tree_type::pointer, Compare, KeyOfValue>, typename boost::container::dtl::get_tree_opt::type:: tree_type, typename boost::container::dtl::get_tree_opt::type:: optimize_size>::type::iterator = boost::intrusive::tree_iterator, boost::container::new_allocator >, boost::interprocess::ipcdetail::ref_count_ptr>, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, false>; boost::container::dtl::tree::key_type = boost::container::basic_string, boost::container::new_allocator >]'
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/interprocess/detail/windows_intermodule_singleton.hpp:190:70:   required from here
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/container/detail/tree.hpp:151:62: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
    {  return *reinterpret_cast(this->m_storage.data);  }
                                                              ^
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/container/detail/tree.hpp: In instantiation of 'const T& boost::container::dtl::tree_node::get_data() const [with T = std::pair > > >; VoidPointer = void*; boost::container::tree_type_enum tree_type_value = (boost::container::tree_type_enum)0u; bool OptimizeSize = true]':
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/container/detail/tree.hpp:443:41:   required from 'static const key_type& boost::container::dtl::key_node_compare::key_from(const boost::container::dtl::tree_node&) [with T = std::pair > > >; VoidPointer = void*; boost::container::tree_type_enum tree_type_value = (boost::container::tree_type_enum)0u; bool OptimizeSize = true; KeyCompare = boost::interprocess::ipcdetail::sync_handles::address_less; KeyOfValue = boost::container::dtl::select1st; boost::container::dtl::key_node_compare::key_type = const boost::interprocess::ipcdetail::sync_id*]'
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/container/detail/tree.hpp:468:60:   required from 'bool boost::container::dtl::key_node_compare::operator()(const U&, const key_type&) const [with U = boost::container::dtl::tree_node > > >, void*, (boost::container::tree_type_enum)0u, true>; KeyCompare = boost::interprocess::ipcdetail::sync_handles::address_less; KeyOfValue = boost::container::dtl::select1st; boost::container::dtl::key_node_compare::key_type = const boost::interprocess::ipcdetail::sync_id*]'
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/intrusive/detail/tree_value_compare.hpp:175:44:   required from 'Ret boost::intrusive::tree_value_compare::operator()(const key_type&, const U&, typename boost::intrusive::disable_if_smartref_to::type*) const [with U = const boost::interprocess::ipcdetail::sync_id*; ValuePtr = boost::container::dtl::tree_node > > >, void*, (boost::container::tree_type_enum)0u, true>*; KeyCompare = boost::container::dtl::key_node_compare >; KeyOfValue = boost::move_detail::identity > > >, void*, (boost::container::tree_type_enum)0u, true> >; Ret = bool; boost::intrusive::tree_value_compare::key_type = boost::container::dtl::tree_node > > >, void*, (boost::container::tree_type_enum)0u, true>; typename boost::intrusive::disable_if_smartref_to::type = void]'
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/intrusive/detail/key_nodeptr_comp.hpp:104:19:   required from 'bool boost::intrusive::detail::key_nodeptr_comp::operator()(const T1&, const T2&, typename boost::move_detail::enable_if_c<(boost::intrusive::detail::key_nodeptr_comp::is_same_or_nodeptr_convertible::value && (! boost::intrusive::detail::key_nodeptr_comp::is_same_or_nodeptr_convertible::value)), boost::intrusive::detail::key_nodeptr_comp::sfinae_type*>::type) const [with T1 = boost::intrusive::compact_rbtree_node*; T2 = const boost::interprocess::ipcdetail::sync_id*; KeyTypeKeyCompare = boost::container::dtl::key_node_compare >; ValueTraits = boost::intrusive::bhtraits > > >, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>; KeyOfValue = boost::move_detail::identity > > >, void*, (boost::container::tree_type_enum)0u, true> >; typename boost::move_detail::enable_if_c<(boost::intrusive::detail::key_nodeptr_comp::is_same_or_nodeptr_convertible::value && (! boost::intrusive::detail::key_nodeptr_comp::is_same_or_nodeptr_convertible::value)), boost::intrusive::detail::key_nodeptr_comp::sfinae_type*>::type = boost::intrusive::detail::key_nodeptr_comp >, boost::intrusive::bhtraits > > >, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, boost::move_detail::identity > > >, void*, (boost::container::tree_type_enum)0u, true> > >::sfinae_type*]'
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/intrusive/bstree_algorithms.hpp:2028:24:   required from 'static boost::intrusive::bstree_algorithms::node_ptr boost::intrusive::bstree_algorithms::lower_bound_loop(boost::intrusive::bstree_algorithms::node_ptr, boost::intrusive::bstree_algorithms::node_ptr, const KeyType&, KeyNodePtrCompare) [with KeyType = const boost::interprocess::ipcdetail::sync_id*; KeyNodePtrCompare = boost::intrusive::detail::key_nodeptr_comp >, boost::intrusive::bhtraits > > >, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, boost::move_detail::identity > > >, void*, (boost::container::tree_type_enum)0u, true> > >; NodeTraits = boost::intrusive::rbtree_node_traits; boost::intrusive::bstree_algorithms::node_ptr = boost::intrusive::compact_rbtree_node*]'
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/intrusive/bstree_algorithms.hpp:920:96:   required from 'static boost::intrusive::bstree_algorithms::node_ptr boost::intrusive::bstree_algorithms::lower_bound(const const_node_ptr&, const KeyType&, KeyNodePtrCompare) [with KeyType = const boost::interprocess::ipcdetail::sync_id*; KeyNodePtrCompare = boost::intrusive::detail::key_nodeptr_comp >, boost::intrusive::bhtraits > > >, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, boost::move_detail::identity > > >, void*, (boost::container::tree_type_enum)0u, true> > >; NodeTraits = boost::intrusive::rbtree_node_traits; boost::intrusive::bstree_algorithms::node_ptr = boost::intrusive::compact_rbtree_node*; boost::intrusive::bstree_algorithms::const_node_ptr = const boost::intrusive::compact_rbtree_node*]'
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/intrusive/bstree.hpp:334:61:   required from 'boost::intrusive::bstbase2::iterator boost::intrusive::bstbase2::lower_bound(const KeyType&, KeyTypeKeyCompare) [with KeyType = const boost::interprocess::ipcdetail::sync_id*; KeyTypeKeyCompare = boost::container::dtl::key_node_compare >; ValueTraits = boost::intrusive::bhtraits > > >, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>; VoidOrKeyOfValue = void; VoidOrKeyComp = boost::container::value_to_node_compare > > >, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::tree_value_compare > > >*, boost::interprocess::ipcdetail::sync_handles::address_less, boost::container::dtl::select1st, bool, false>, bool>; boost::intrusive::algo_types AlgoType = (boost::intrusive::algo_types)5u; HeaderHolder = void; boost::intrusive::bstbase2::iterator = boost::intrusive::tree_iterator > > >, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, false>]'
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/container/detail/tree.hpp:1337:79:   required from 'boost::container::dtl::tree::iterator boost::container::dtl::tree::lower_bound(const key_type&) [with T = std::pair > > >; KeyOfValue = boost::container::dtl::select1st; Compare = boost::interprocess::ipcdetail::sync_handles::address_less; Allocator = boost::container::new_allocator > > > >; Options = void; boost::container::dtl::tree::iterator = boost::container::dtl::iterator_from_iiterator > > >, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, false>, false>; typename boost::container::dtl::intrusive_tree_type::pointer, Compare, KeyOfValue>, typename boost::container::dtl::get_tree_opt::type:: tree_type, typename boost::container::dtl::get_tree_opt::type:: optimize_size>::type::iterator = boost::intrusive::tree_iterator > > >, void*, (boost::container::tree_type_enum)0u, true>, boost::intrusive::rbtree_node_traits, (boost::intrusive::link_mode_type)0u, boost::intrusive::dft_tag, 3u>, false>; boost::container::dtl::tree::key_type = const boost::interprocess::ipcdetail::sync_id*]'
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/interprocess/sync/windows/sync_utils.hpp:217:56:   required from here
C:/Users/biocbuild/bbs-3.9-bioc/R/library/BH/include/boost/container/detail/tree.hpp:151:62: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o BiocParallel.dll tmp.def ipcmutex.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/BiocParallel.buildbin-libdir/BiocParallel/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BiocParallel' as BiocParallel_1.18.1.zip
* DONE (BiocParallel)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'BiocParallel' successfully unpacked and MD5 sums checked

Tests output

BiocParallel.Rcheck/tests_i386/test.Rout


R version 3.6.1 (2019-07-05) -- "Action of the Toes"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> BiocGenerics:::testPackage("BiocParallel")
Submitting 5 jobs in 4 chunks using cluster functions 'Socket' ...
> > > > Submitting 5 jobs in 4 chunks using cluster functions 'Socket' ...
Submitting 5 jobs in 4 chunks using cluster functions 'Socket' ...
> > > > > > > > Submitting 5 jobs in 4 chunks using cluster functions 'Socket' ...
> > > > > > > > > > > > > > > > > > > > > > > > > > > Timing stopped at: 0 0 0
Error in DEACTIVATED("MPI tests not run on Windows") : 
  MPI tests not run on Windows
Timing stopped at: 0 0 0
Error in DEACTIVATED("MPI tests not run on Windows") : 
  MPI tests not run on Windows
> > 

RUNIT TEST PROTOCOL -- Wed Oct 16 02:22:08 2019 
*********************************************** 
Number of test functions: 69 
Number of deactivated test functions: 2 
Number of errors: 0 
Number of failures: 0 

 
1 Test Suite : 
BiocParallel RUnit Tests - 69 test functions, 0 errors, 0 failures
Number of test functions: 69 
Number of deactivated test functions: 2 
Number of errors: 0 
Number of failures: 0 
> 
> proc.time()
   user  system elapsed 
  27.12    1.70  243.71 
Error in summary.connection(connection) : invalid connection
Calls:  ... sendData.SOCKnode -> serialize -> summary -> summary.connection
Error in summary.connection(connection) : invalid connection
Calls:  ... sendData.SOCKnode -> serialize -> summary -> summary.connection
Error in summary.connection(connection) : invalid connection
Calls:  ... sendData.SOCKnode -> serialize -> summary -> summary.connection
Error in summary.connection(connection) : invalid connection
Calls:  ... sendData.SOCKnode -> serialize -> summary -> summary.connection
Error in summary.connection(connection) : invalid connection
Calls:  ... sendData.SOCKnode -> serialize -> summary -> summary.connection
Error in summary.connection(connection) : invalid connection
Calls:  ... sendData.SOCKnode -> serialize -> summary -> summary.connection

BiocParallel.Rcheck/tests_x64/test.Rout


R version 3.6.1 (2019-07-05) -- "Action of the Toes"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> BiocGenerics:::testPackage("BiocParallel")
Submitting 5 jobs in 4 chunks using cluster functions 'Socket' ...
> > > > Submitting 5 jobs in 4 chunks using cluster functions 'Socket' ...
Submitting 5 jobs in 4 chunks using cluster functions 'Socket' ...
> > > > > > > > Submitting 5 jobs in 4 chunks using cluster functions 'Socket' ...
> > > > > > > > > > > > > > > > > > > > > > > > > > > Timing stopped at: 0 0 0
Error in DEACTIVATED("MPI tests not run on Windows") : 
  MPI tests not run on Windows
Timing stopped at: 0 0 0
Error in DEACTIVATED("MPI tests not run on Windows") : 
  MPI tests not run on Windows
> > 

RUNIT TEST PROTOCOL -- Wed Oct 16 02:26:37 2019 
*********************************************** 
Number of test functions: 69 
Number of deactivated test functions: 2 
Number of errors: 0 
Number of failures: 0 

 
1 Test Suite : 
BiocParallel RUnit Tests - 69 test functions, 0 errors, 0 failures
Number of test functions: 69 
Number of deactivated test functions: 2 
Number of errors: 0 
Number of failures: 0 
> 
> proc.time()
   user  system elapsed 
  31.42    1.87  268.81 
Error in summary.connection(connection) : invalid connection
Calls:  ... sendData.SOCKnode -> serialize -> summary -> summary.connection
Error in summary.connection(connection) : invalid connection
Calls:  ... sendData.SOCKnode -> serialize -> summary -> summary.connection
Error in summary.connection(connection) : invalid connection
Calls:  ... sendData.SOCKnode -> serialize -> summary -> summary.connection
Error in summary.connection(connection) : invalid connection
Calls:  ... sendData.SOCKnode -> serialize -> summary -> summary.connection
Error in summary.connection(connection) : invalid connection
Calls:  ... sendData.SOCKnode -> serialize -> summary -> summary.connection
Error in summary.connection(connection) : invalid connection
Calls:  ... sendData.SOCKnode -> serialize -> summary -> summary.connection

Example timings

BiocParallel.Rcheck/examples_i386/BiocParallel-Ex.timings

nameusersystemelapsed
BatchJobsParam-class3.360.203.83
BatchtoolsParam-class 0.69 0.1326.36
BiocParallelParam-class000
DeveloperInterface000
DoparParam-class000
MulticoreParam-class0.190.022.26
SerialParam-class0.020.000.02
SnowParam-class0.790.046.45
bpaggregate 6.89 0.5015.20
bpiterate000
bplapply0.810.007.67
bploop000
bpmapply1.610.024.92
bpok 2.16 0.0014.55
bpschedule0.510.000.52
bptry 0.97 0.0210.48
bpvalidate0.220.010.23
bpvec0.970.037.69
bpvectorize0.540.027.17
ipcmutex 1.11 0.0316.97
register0.580.037.25

BiocParallel.Rcheck/examples_x64/BiocParallel-Ex.timings

nameusersystemelapsed
BatchJobsParam-class3.380.143.52
BatchtoolsParam-class 0.67 0.0618.57
BiocParallelParam-class000
DeveloperInterface000
DoparParam-class000
MulticoreParam-class0.220.032.31
SerialParam-class000
SnowParam-class0.960.006.64
bpaggregate 8.11 0.2716.84
bpiterate000
bplapply0.860.017.45
bploop000
bpmapply1.800.005.86
bpok 2.56 0.0214.86
bpschedule0.590.000.59
bptry 1.30 0.0112.44
bpvalidate0.200.020.22
bpvec1.190.007.86
bpvectorize0.620.007.95
ipcmutex 1.36 0.0317.39
register0.700.007.55