Back to Multiple platform build/check report for BioC 3.9
A[B]CDEFGHIJKLMNOPQRSTUVWXYZ

INSTALL report for BatchQC on tokay2

This page was generated on 2019-10-16 12:35:38 -0400 (Wed, 16 Oct 2019).

Package 111/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BatchQC 1.12.1
Solaiappan Manimaran
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/BatchQC
Branch: RELEASE_3_9
Last Commit: dd86b3a
Last Changed Date: 2019-10-13 23:42:55 -0400 (Sun, 13 Oct 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: BatchQC
Version: 1.12.1
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/BatchQC_1.12.1.tar.gz && rm -rf BatchQC.buildbin-libdir && mkdir BatchQC.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BatchQC.buildbin-libdir BatchQC_1.12.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL BatchQC_1.12.1.zip && rm BatchQC_1.12.1.tar.gz BatchQC_1.12.1.zip
StartedAt: 2019-10-15 19:31:31 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 19:33:09 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 97.5 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/BatchQC_1.12.1.tar.gz && rm -rf BatchQC.buildbin-libdir && mkdir BatchQC.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BatchQC.buildbin-libdir BatchQC_1.12.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL BatchQC_1.12.1.zip && rm BatchQC_1.12.1.tar.gz BatchQC_1.12.1.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 1261k  100 1261k    0     0  16.6M      0 --:--:-- --:--:-- --:--:-- 18.3M

install for i386

* installing *source* package 'BatchQC' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'BatchQC'
    finding HTML links ... done
    BatchQCout-class                        html  
    batchQC                                 html  
    batchQC_analyze                         html  
    batchQC_condition_adjusted              html  
    batchQC_filter_genes                    html  
    batchQC_fsva_adjusted                   html  
    batchQC_num.sv                          html  
    batchQC_shapeVariation                  html  
    batchQC_sva                             html  
    batchQC_svregress_adjusted              html  
    batchqc_circosplot                      html  
    batchqc_correlation                     html  
    batchqc_corscatter                      html  
    batchqc_explained_variation             html  
    batchqc_heatmap                         html  
    batchqc_pc_explained_variation          html  
    batchqc_pca                             html  
    batchqc_pca_svd                         html  
    batchtest                               html  
    combatPlot                              html  
    example_batchqc_data                    html  
    getShinyInput                           html  
    getShinyInputCombat                     html  
    getShinyInputOrig                       html  
    getShinyInputSVA                        html  
    getShinyInputSVAf                       html  
    getShinyInputSVAr                       html  
    gnormalize                              html  
    lmFitC                                  html  
    log2CPM                                 html  
    makeSVD                                 html  
    pcRes                                   html  
    plotPC                                  html  
    plot_genewise_moments                   html  
    plot_samplewise_moments                 html  
    protein_example_data                    html  
    rnaseq_sim                              html  
    setShinyInput                           html  
    setShinyInputCombat                     html  
    setShinyInputOrig                       html  
    setShinyInputSVA                        html  
    setShinyInputSVAf                       html  
    setShinyInputSVAr                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'BatchQC' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BatchQC' as BatchQC_1.12.1.zip
* DONE (BatchQC)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'BatchQC' successfully unpacked and MD5 sums checked