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INSTALL report for ACME on tokay2

This page was generated on 2019-10-16 12:21:13 -0400 (Wed, 16 Oct 2019).

Package 14/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ACME 2.40.0
Sean Davis
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/ACME
Branch: RELEASE_3_9
Last Commit: 38499e5
Last Changed Date: 2019-05-02 11:53:07 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: ACME
Version: 2.40.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/ACME_2.40.0.tar.gz && rm -rf ACME.buildbin-libdir && mkdir ACME.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ACME.buildbin-libdir ACME_2.40.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL ACME_2.40.0.zip && rm ACME_2.40.0.tar.gz ACME_2.40.0.zip
StartedAt: 2019-10-15 19:48:16 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 19:49:21 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 65.0 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/ACME_2.40.0.tar.gz && rm -rf ACME.buildbin-libdir && mkdir ACME.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ACME.buildbin-libdir ACME_2.40.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL ACME_2.40.0.zip && rm ACME_2.40.0.tar.gz ACME_2.40.0.zip
###
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100 9442k  100 9442k    0     0  43.3M      0 --:--:-- --:--:-- --:--:-- 44.9M

install for i386

* installing *source* package 'ACME' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c windowChisq.c -o windowChisq.o
windowChisq.c: In function 'windowChisq':
windowChisq.c:58:14: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
    firstprobe>0) {
              ^
windowChisq.c:63:13: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
    lastprobe<(na-1)) {
             ^
windowChisq.c:21:11: warning: unused variable 'xa' [-Wunused-variable]
   double *xa,*xlocations,*xchivals;
           ^
windowChisq.c: At top level:
windowChisq.c:86:5: warning: initialization from incompatible pointer type
     {"windowChisq",&windowChisq,5},
     ^
windowChisq.c:86:5: warning: (near initialization for 'callMethods[0].fun')
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o ACME.dll tmp.def windowChisq.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/ACME.buildbin-libdir/00LOCK-ACME/00new/ACME/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'ACME'
    finding HTML links ... done
    ACMECalcSet-class                       html  
    finding level-2 HTML links ... done

    ACMESet-class                           html  
    aGFF-class                              html  
    aGFFCalc-class                          html  
    do.aGFF.calc                            html  
    example.agff                            html  
    findClosestGene                         html  
    findRegions                             html  
    generics                                html  
    getRefflat                              html  
    read.resultsGFF                         html  
    write.bedGraph                          html  
    write.sgr                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'ACME' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c windowChisq.c -o windowChisq.o
windowChisq.c: In function 'windowChisq':
windowChisq.c:58:14: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
    firstprobe>0) {
              ^
windowChisq.c:63:13: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
    lastprobe<(na-1)) {
             ^
windowChisq.c:21:11: warning: unused variable 'xa' [-Wunused-variable]
   double *xa,*xlocations,*xchivals;
           ^
windowChisq.c: At top level:
windowChisq.c:86:5: warning: initialization from incompatible pointer type
     {"windowChisq",&windowChisq,5},
     ^
windowChisq.c:86:5: warning: (near initialization for 'callMethods[0].fun')
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o ACME.dll tmp.def windowChisq.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/ACME.buildbin-libdir/ACME/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ACME' as ACME_2.40.0.zip
* DONE (ACME)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'ACME' successfully unpacked and MD5 sums checked