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INSTALL report for biomaRt on tokay2

This page was generated on 2019-10-16 12:19:49 -0400 (Wed, 16 Oct 2019).

Package 159/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
biomaRt 2.40.5
Mike Smith
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/biomaRt
Branch: RELEASE_3_9
Last Commit: ed9ddaf
Last Changed Date: 2019-10-01 05:00:18 -0400 (Tue, 01 Oct 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: biomaRt
Version: 2.40.5
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/biomaRt_2.40.5.tar.gz && rm -rf biomaRt.buildbin-libdir && mkdir biomaRt.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=biomaRt.buildbin-libdir biomaRt_2.40.5.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL biomaRt_2.40.5.zip && rm biomaRt_2.40.5.tar.gz biomaRt_2.40.5.zip
StartedAt: 2019-10-15 19:47:07 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 19:48:28 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 80.1 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/biomaRt_2.40.5.tar.gz && rm -rf biomaRt.buildbin-libdir && mkdir biomaRt.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=biomaRt.buildbin-libdir biomaRt_2.40.5.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL biomaRt_2.40.5.zip && rm biomaRt_2.40.5.tar.gz biomaRt_2.40.5.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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100  111k  100  111k    0     0   815k      0 --:--:-- --:--:-- --:--:--  855k

install for i386

* installing *source* package 'biomaRt' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'biomaRt'
    finding HTML links ... done
    Mart-class                              html  
    NP2009code                              html  
    attributePages                          html  
    exportFASTA                             html  
    filterOptions                           html  
    filterType                              html  
    getBM                                   html  
    getBMlist                               html  
    getGene                                 html  
    getLDS                                  html  
    getSequence                             html  
    getXML                                  html  
    listAttributes                          html  
    listDatasets                            html  
    listEnsembl                             html  
    listEnsemblArchives                     html  
    listFilterValues                        html  
    listFilters                             html  
    listMarts                               html  
    select                                  html  
    useDataset                              html  
    useEnsembl                              html  
    useMart                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'biomaRt' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'biomaRt' as biomaRt_2.40.5.zip
* DONE (biomaRt)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'biomaRt' successfully unpacked and MD5 sums checked