Mark van de Wiel
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/CGHbase |
| Branch: RELEASE_3_9 |
| Last Commit: 8503aff |
| Last Changed Date: 2019-05-02 11:53:10 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:21:53 -0400 (Wed, 16 Oct 2019).
| Package 241/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| CGHbase 1.44.0 Mark van de Wiel
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | [ OK ] | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: CGHbase |
| Version: 1.44.0 |
| Command: rm -rf CGHbase.buildbin-libdir && mkdir CGHbase.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CGHbase.buildbin-libdir CGHbase_1.44.0.tar.gz |
| StartedAt: 2019-10-16 08:52:14 -0400 (Wed, 16 Oct 2019) |
| EndedAt: 2019-10-16 08:52:48 -0400 (Wed, 16 Oct 2019) |
| EllapsedTime: 33.5 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: CGHbase_1.44.0.zip |
| PackageFileSize: 1.06 MiB |
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### Running command:
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### rm -rf CGHbase.buildbin-libdir && mkdir CGHbase.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CGHbase.buildbin-libdir CGHbase_1.44.0.tar.gz
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install for i386
* installing *source* package 'CGHbase' ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'CGHbase'
finding HTML links ... done
CGHbase-package html
Wilting html
WiltingCalled html
WiltingNorm html
WiltingRaw html
WiltingRegions html
WiltingSeg html
avedist html
chromosomes html
class.cghCall html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpwxBvbg/R.INSTALL4fc7c985bc3/CGHbase/man/class.cghCall.Rd:42: file link 'eSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpwxBvbg/R.INSTALL4fc7c985bc3/CGHbase/man/class.cghCall.Rd:56: file link 'eSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpwxBvbg/R.INSTALL4fc7c985bc3/CGHbase/man/class.cghCall.Rd:95: file link 'AssayData-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpwxBvbg/R.INSTALL4fc7c985bc3/CGHbase/man/class.cghCall.Rd:96: file link 'eSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpwxBvbg/R.INSTALL4fc7c985bc3/CGHbase/man/class.cghCall.Rd:97: file link 'AnnotatedDataFrame' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpwxBvbg/R.INSTALL4fc7c985bc3/CGHbase/man/class.cghCall.Rd:100: file link 'eSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpwxBvbg/R.INSTALL4fc7c985bc3/CGHbase/man/class.cghCall.Rd:101: file link 'eSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpwxBvbg/R.INSTALL4fc7c985bc3/CGHbase/man/class.cghCall.Rd:137: file link 'eSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpwxBvbg/R.INSTALL4fc7c985bc3/CGHbase/man/class.cghCall.Rd:143: file link 'eSet-class' in package 'Biobase' does not exist and so has been treated as a topic
class.cghRaw html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpwxBvbg/R.INSTALL4fc7c985bc3/CGHbase/man/class.cghRaw.Rd:25: file link 'eSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpwxBvbg/R.INSTALL4fc7c985bc3/CGHbase/man/class.cghRaw.Rd:30: file link 'eSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpwxBvbg/R.INSTALL4fc7c985bc3/CGHbase/man/class.cghRaw.Rd:62: file link 'AssayData-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpwxBvbg/R.INSTALL4fc7c985bc3/CGHbase/man/class.cghRaw.Rd:63: file link 'eSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpwxBvbg/R.INSTALL4fc7c985bc3/CGHbase/man/class.cghRaw.Rd:64: file link 'AnnotatedDataFrame' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpwxBvbg/R.INSTALL4fc7c985bc3/CGHbase/man/class.cghRaw.Rd:67: file link 'eSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpwxBvbg/R.INSTALL4fc7c985bc3/CGHbase/man/class.cghRaw.Rd:68: file link 'eSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpwxBvbg/R.INSTALL4fc7c985bc3/CGHbase/man/class.cghRaw.Rd:82: file link 'eSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpwxBvbg/R.INSTALL4fc7c985bc3/CGHbase/man/class.cghRaw.Rd:88: file link 'eSet-class' in package 'Biobase' does not exist and so has been treated as a topic
class.cghRegions html
class.cghSeg html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpwxBvbg/R.INSTALL4fc7c985bc3/CGHbase/man/class.cghSeg.Rd:27: file link 'eSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpwxBvbg/R.INSTALL4fc7c985bc3/CGHbase/man/class.cghSeg.Rd:33: file link 'eSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpwxBvbg/R.INSTALL4fc7c985bc3/CGHbase/man/class.cghSeg.Rd:60: file link 'AssayData-class' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpwxBvbg/R.INSTALL4fc7c985bc3/CGHbase/man/class.cghSeg.Rd:61: file link 'eSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpwxBvbg/R.INSTALL4fc7c985bc3/CGHbase/man/class.cghSeg.Rd:62: file link 'AnnotatedDataFrame' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpwxBvbg/R.INSTALL4fc7c985bc3/CGHbase/man/class.cghSeg.Rd:65: file link 'eSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpwxBvbg/R.INSTALL4fc7c985bc3/CGHbase/man/class.cghSeg.Rd:66: file link 'eSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpwxBvbg/R.INSTALL4fc7c985bc3/CGHbase/man/class.cghSeg.Rd:85: file link 'eSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpwxBvbg/R.INSTALL4fc7c985bc3/CGHbase/man/class.cghSeg.Rd:91: file link 'eSet-class' in package 'Biobase' does not exist and so has been treated as a topic
copynumber html
frequencyPlot html
frequencyPlotCalls html
make_cghRaw html
plot html
probloss html
regions html
summaryPlot html
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'CGHbase' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CGHbase' as CGHbase_1.44.0.zip
* DONE (CGHbase)