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INSTALL report for BioQC on malbec2

This page was generated on 2019-10-16 12:07:52 -0400 (Wed, 16 Oct 2019).

Package 166/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BioQC 1.12.0
Jitao David Zhang
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/BioQC
Branch: RELEASE_3_9
Last Commit: 54cb13d
Last Changed Date: 2019-05-02 11:53:59 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64 [ OK ] ERROR  skipped 
tokay2 Windows Server 2012 R2 Standard / x64  OK  ERROR  skipped  skipped 
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  ERROR  skipped  skipped 

Summary

Package: BioQC
Version: 1.12.0
Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL BioQC
StartedAt: 2019-10-15 18:12:44 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 18:13:08 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 23.7 seconds
RetCode: 0
Status:  OK 

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL BioQC
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* installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’
* installing *source* package ‘BioQC’ ...
** using staged installation
** libs
gcc -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG `/home/biocbuild/bbs-3.9-bioc/R/bin/Rscript -e 'Rcpp:::CxxFlags()'`  -I/usr/local/include  -fpic  -g -O2  -Wall -c gini.c -o gini.o
gcc -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG `/home/biocbuild/bbs-3.9-bioc/R/bin/Rscript -e 'Rcpp:::CxxFlags()'`  -I/usr/local/include  -fpic  -g -O2  -Wall -c init.c -o init.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG `/home/biocbuild/bbs-3.9-bioc/R/bin/Rscript -e 'Rcpp:::CxxFlags()'`  -I/usr/local/include  -fpic  -g -O2  -Wall -c read_gmt.cpp -o read_gmt.o
gcc -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG `/home/biocbuild/bbs-3.9-bioc/R/bin/Rscript -e 'Rcpp:::CxxFlags()'`  -I/usr/local/include  -fpic  -g -O2  -Wall -c stat_rank.c -o stat_rank.o
gcc -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG `/home/biocbuild/bbs-3.9-bioc/R/bin/Rscript -e 'Rcpp:::CxxFlags()'`  -I/usr/local/include  -fpic  -g -O2  -Wall -c wmw_test.c -o wmw_test.o
wmw_test.c: In function ‘wmw_test_list’:
wmw_test.c:105:0: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
 #pragma omp parallel for
 
wmw_test.c: In function ‘wmw_test’:
wmw_test.c:155:0: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
 #pragma omp parallel for
 
wmw_test.c: In function ‘signed_wmw_test_list’:
wmw_test.c:188:0: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
 #pragma omp parallel for
 
wmw_test.c: In function ‘signed_wmw_test’:
wmw_test.c:257:0: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
 #pragma omp parallel for
 
g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.9-bioc/R/lib -L/usr/local/lib -o BioQC.so gini.o init.o read_gmt.o stat_rank.o wmw_test.o -L/home/biocbuild/bbs-3.9-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.9-bioc/R/library/00LOCK-BioQC/00new/BioQC/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
Warning: /home/biocbuild/bbs-3.9-bioc/meat/BioQC/man/IndexList.Rd:6: All text must be in a section
Warning: /home/biocbuild/bbs-3.9-bioc/meat/BioQC/man/IndexList.Rd:7: All text must be in a section
Warning: /home/biocbuild/bbs-3.9-bioc/meat/BioQC/man/IndexList.Rd:9: All text must be in a section
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BioQC)