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INSTALL report for BicARE on tokay2

This page was generated on 2019-10-16 12:22:14 -0400 (Wed, 16 Oct 2019).

Package 132/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BicARE 1.42.0
Pierre Gestraud
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/BicARE
Branch: RELEASE_3_9
Last Commit: 81ef752
Last Changed Date: 2019-05-02 11:53:11 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: BicARE
Version: 1.42.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/BicARE_1.42.0.tar.gz && rm -rf BicARE.buildbin-libdir && mkdir BicARE.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BicARE.buildbin-libdir BicARE_1.42.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL BicARE_1.42.0.zip && rm BicARE_1.42.0.tar.gz BicARE_1.42.0.zip
StartedAt: 2019-10-15 19:12:23 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 19:13:11 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 48.1 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/BicARE_1.42.0.tar.gz && rm -rf BicARE.buildbin-libdir && mkdir BicARE.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BicARE.buildbin-libdir BicARE_1.42.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL BicARE_1.42.0.zip && rm BicARE_1.42.0.tar.gz BicARE_1.42.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  199k  100  199k    0     0  1641k      0 --:--:-- --:--:-- --:--:-- 1720k

install for i386

* installing *source* package 'BicARE' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c BicARE.c -o BicARE.o
BicARE.c: In function 'floc':
BicARE.c:439:12: warning: unused variable 'invk' [-Wunused-variable]
     double invk = 1/(double)*k;
            ^
BicARE.c: In function 'action':
BicARE.c:391:29: warning: 'j' may be used uninitialized in this function [-Wmaybe-uninitialized]
        bicCol2[ncolData * z + j] = bicCol[ncolData * z +j];
                             ^
BicARE.c:380:29: warning: 'i' may be used uninitialized in this function [-Wmaybe-uninitialized]
        bicRow2[nrowData * z + i] = bicRow[nrowData * z + i];
                             ^
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o BicARE.dll tmp.def BicARE.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/BicARE.buildbin-libdir/00LOCK-BicARE/00new/BicARE/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'BicARE'
    finding HTML links ... done
    BicARE-package                          html  
    FLOC                                    html  
    bicluster                               html  
    makeReport                              html  
    residue                                 html  
    sample.bicData                          html  
    sample.biclustering                     html  
    testAnnot                               html  
    testSet                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'BicARE' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c BicARE.c -o BicARE.o
BicARE.c: In function 'floc':
BicARE.c:439:12: warning: unused variable 'invk' [-Wunused-variable]
     double invk = 1/(double)*k;
            ^
BicARE.c: In function 'action':
BicARE.c:391:29: warning: 'j' may be used uninitialized in this function [-Wmaybe-uninitialized]
        bicCol2[ncolData * z + j] = bicCol[ncolData * z +j];
                             ^
BicARE.c:380:29: warning: 'i' may be used uninitialized in this function [-Wmaybe-uninitialized]
        bicRow2[nrowData * z + i] = bicRow[nrowData * z + i];
                             ^
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o BicARE.dll tmp.def BicARE.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/BicARE.buildbin-libdir/BicARE/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BicARE' as BicARE_1.42.0.zip
* DONE (BicARE)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'BicARE' successfully unpacked and MD5 sums checked