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BUILD BIN report for BAGS on tokay2

This page was generated on 2019-04-09 12:00:12 -0400 (Tue, 09 Apr 2019).

Package 98/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BAGS 2.23.0
Alejandro Quiroz-Zarate
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/BAGS
Branch: master
Last Commit: 94b371b
Last Changed Date: 2018-10-30 11:54:30 -0400 (Tue, 30 Oct 2018)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK 

Summary

Package: BAGS
Version: 2.23.0
Command: rm -rf BAGS.buildbin-libdir && mkdir BAGS.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BAGS.buildbin-libdir BAGS_2.23.0.tar.gz
StartedAt: 2019-04-09 07:27:42 -0400 (Tue, 09 Apr 2019)
EndedAt: 2019-04-09 07:28:00 -0400 (Tue, 09 Apr 2019)
EllapsedTime: 18.6 seconds
RetCode: 0
Status:  OK  
PackageFile: BAGS_2.23.0.zip
PackageFileSize: 318.2 KiB

Command output

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###
### Running command:
###
###   rm -rf BAGS.buildbin-libdir && mkdir BAGS.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BAGS.buildbin-libdir BAGS_2.23.0.tar.gz
###
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install for i386

* installing *source* package 'BAGS' ...
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c BAGS.c -o BAGS.o
In file included from BAGS.c:8:0:
FuncionesFast-Final.h: In function 'BetaFunCSDiff2':
FuncionesFast-Final.h:145:70: warning: unused variable 'YMu1' [-Wunused-variable]
     double media1,media,varianza1,varianza,resultado,varaux0,varaux1,YMu1;
                                                                      ^
FuncionesFast-Final.h: In function 'AlfaFunCS':
FuncionesFast-Final.h:166:105: warning: unused variable 'MediaDiff' [-Wunused-variable]
     double CSiDiff,CNoDiff,Cest,Mu,aux1,aux4,suma,zuma,cons,rznLog,rzn,prob,alea,resultado,C,A,varianza,MediaDiff;
                                                                                                         ^
FuncionesFast-Final.h:166:94: warning: unused variable 'A' [-Wunused-variable]
     double CSiDiff,CNoDiff,Cest,Mu,aux1,aux4,suma,zuma,cons,rznLog,rzn,prob,alea,resultado,C,A,varianza,MediaDiff;
                                                                                              ^
FuncionesFast-Final.h:166:92: warning: unused variable 'C' [-Wunused-variable]
     double CSiDiff,CNoDiff,Cest,Mu,aux1,aux4,suma,zuma,cons,rznLog,rzn,prob,alea,resultado,C,A,varianza,MediaDiff;
                                                                                            ^
BAGS.c: In function 'Gibbs5':
BAGS.c:25:48: warning: unused variable 'resI' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;
                                                ^
BAGS.c:25:43: warning: unused variable 'rate' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;
                                           ^
BAGS.c:25:36: warning: unused variable 'escala' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;
                                    ^
BAGS.c:25:28: warning: unused variable 'escala3' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;
                            ^
BAGS.c:25:20: warning: unused variable 'escala2' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;
                    ^
BAGS.c:25:12: warning: unused variable 'escala1' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;
            ^
BAGS.c:24:12: warning: unused variable 'formaAux' [-Wunused-variable]
     double formaAux;
            ^
BAGS.c:18:80: warning: variable 'ResSgmA' set but not used [-Wunused-but-set-variable]
     double ResRho1,ResRho2,ResRho3,ResRho4,ResSgmA1,ResSgmA2,ResSgmA3,ResSgmA4,ResSgmA;
                                                                                ^
BAGS.c:15:15: warning: variable 'AaPi' set but not used [-Wunused-but-set-variable]
     double Mm,AaPi,Ade,Ss,Rr,c0,prob,alea,forma1,forma2,shape1,shape2;
               ^
BAGS.c: In function 'Gibbs4':
BAGS.c:342:48: warning: unused variable 'resI' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                                                ^
BAGS.c:342:43: warning: unused variable 'rate' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                                           ^
BAGS.c:342:36: warning: unused variable 'escala' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                                    ^
BAGS.c:342:28: warning: unused variable 'escala3' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                            ^
BAGS.c:342:20: warning: unused variable 'escala2' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                    ^
BAGS.c:342:12: warning: unused variable 'escala1' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
            ^
BAGS.c:341:12: warning: unused variable 'formaAux' [-Wunused-variable]
     double formaAux;
            ^
BAGS.c:335:63: warning: variable 'ResSgmA' set but not used [-Wunused-but-set-variable]
     double ResRho1,ResRho2,ResRho3,ResSgmA1,ResSgmA2,ResSgmA3,ResSgmA;
                                                               ^
BAGS.c:332:15: warning: variable 'AaPi' set but not used [-Wunused-but-set-variable]
     double Mm,AaPi,Ade,Ss,Rr,c0,prob,alea,forma1,forma2,shape1,shape2;
               ^
BAGS.c: In function 'Gibbs3':
BAGS.c:593:48: warning: unused variable 'resI' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                                                ^
BAGS.c:593:43: warning: unused variable 'rate' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                                           ^
BAGS.c:593:36: warning: unused variable 'escala' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                                    ^
BAGS.c:593:28: warning: unused variable 'escala3' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                            ^
BAGS.c:593:20: warning: unused variable 'escala2' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                    ^
BAGS.c:593:12: warning: unused variable 'escala1' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
            ^
BAGS.c:592:12: warning: unused variable 'formaAux' [-Wunused-variable]
     double formaAux;
            ^
BAGS.c:586:46: warning: variable 'ResSgmA' set but not used [-Wunused-but-set-variable]
     double ResRho1,ResRho2,ResSgmA1,ResSgmA2,ResSgmA;
                                              ^
BAGS.c:583:15: warning: variable 'AaPi' set but not used [-Wunused-but-set-variable]
     double Mm,AaPi,Ade,Ss,Rr,c0,prob,alea,forma1,forma2,shape1,shape2;
               ^
BAGS.c: In function 'Gibbs2':
BAGS.c:786:48: warning: unused variable 'resI' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                                                ^
BAGS.c:786:43: warning: unused variable 'rate' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                                           ^
BAGS.c:786:36: warning: unused variable 'escala' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                                    ^
BAGS.c:786:28: warning: unused variable 'escala3' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                            ^
BAGS.c:786:20: warning: unused variable 'escala2' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                    ^
BAGS.c:786:12: warning: unused variable 'escala1' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
            ^
BAGS.c:785:12: warning: unused variable 'formaAux' [-Wunused-variable]
     double formaAux;
            ^
BAGS.c:779:29: warning: variable 'ResSgmA' set but not used [-Wunused-but-set-variable]
     double ResRho1,ResSgmA1,ResSgmA;
                             ^
BAGS.c:776:15: warning: variable 'AaPi' set but not used [-Wunused-but-set-variable]
     double Mm,AaPi,Ade,Ss,Rr,c0,prob,alea,forma1,forma2,shape1,shape2;
               ^
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o BAGS.dll tmp.def BAGS.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/BAGS.buildbin-libdir/00LOCK-BAGS/00new/BAGS/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'BAGS'
    finding HTML links ... done
    AnnotationMFGO                          html  
    BAGS-internal                           html  
    BAGS-package                            html  
    DataGeneSets                            html  
    Gibbs2                                  html  
    Gibbs3                                  html  
    Gibbs4                                  html  
    Gibbs5                                  html  
    MCMCDataSet                             html  
    ReadGMT                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'BAGS' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c BAGS.c -o BAGS.o
In file included from BAGS.c:8:0:
FuncionesFast-Final.h: In function 'BetaFunCSDiff2':
FuncionesFast-Final.h:145:70: warning: unused variable 'YMu1' [-Wunused-variable]
     double media1,media,varianza1,varianza,resultado,varaux0,varaux1,YMu1;
                                                                      ^
FuncionesFast-Final.h: In function 'AlfaFunCS':
FuncionesFast-Final.h:166:105: warning: unused variable 'MediaDiff' [-Wunused-variable]
     double CSiDiff,CNoDiff,Cest,Mu,aux1,aux4,suma,zuma,cons,rznLog,rzn,prob,alea,resultado,C,A,varianza,MediaDiff;
                                                                                                         ^
FuncionesFast-Final.h:166:94: warning: unused variable 'A' [-Wunused-variable]
     double CSiDiff,CNoDiff,Cest,Mu,aux1,aux4,suma,zuma,cons,rznLog,rzn,prob,alea,resultado,C,A,varianza,MediaDiff;
                                                                                              ^
FuncionesFast-Final.h:166:92: warning: unused variable 'C' [-Wunused-variable]
     double CSiDiff,CNoDiff,Cest,Mu,aux1,aux4,suma,zuma,cons,rznLog,rzn,prob,alea,resultado,C,A,varianza,MediaDiff;
                                                                                            ^
BAGS.c: In function 'Gibbs5':
BAGS.c:25:48: warning: unused variable 'resI' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;
                                                ^
BAGS.c:25:43: warning: unused variable 'rate' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;
                                           ^
BAGS.c:25:36: warning: unused variable 'escala' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;
                                    ^
BAGS.c:25:28: warning: unused variable 'escala3' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;
                            ^
BAGS.c:25:20: warning: unused variable 'escala2' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;
                    ^
BAGS.c:25:12: warning: unused variable 'escala1' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;
            ^
BAGS.c:24:12: warning: unused variable 'formaAux' [-Wunused-variable]
     double formaAux;
            ^
BAGS.c:18:80: warning: variable 'ResSgmA' set but not used [-Wunused-but-set-variable]
     double ResRho1,ResRho2,ResRho3,ResRho4,ResSgmA1,ResSgmA2,ResSgmA3,ResSgmA4,ResSgmA;
                                                                                ^
BAGS.c:15:15: warning: variable 'AaPi' set but not used [-Wunused-but-set-variable]
     double Mm,AaPi,Ade,Ss,Rr,c0,prob,alea,forma1,forma2,shape1,shape2;
               ^
BAGS.c: In function 'Gibbs4':
BAGS.c:342:48: warning: unused variable 'resI' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                                                ^
BAGS.c:342:43: warning: unused variable 'rate' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                                           ^
BAGS.c:342:36: warning: unused variable 'escala' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                                    ^
BAGS.c:342:28: warning: unused variable 'escala3' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                            ^
BAGS.c:342:20: warning: unused variable 'escala2' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                    ^
BAGS.c:342:12: warning: unused variable 'escala1' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
            ^
BAGS.c:341:12: warning: unused variable 'formaAux' [-Wunused-variable]
     double formaAux;
            ^
BAGS.c:335:63: warning: variable 'ResSgmA' set but not used [-Wunused-but-set-variable]
     double ResRho1,ResRho2,ResRho3,ResSgmA1,ResSgmA2,ResSgmA3,ResSgmA;
                                                               ^
BAGS.c:332:15: warning: variable 'AaPi' set but not used [-Wunused-but-set-variable]
     double Mm,AaPi,Ade,Ss,Rr,c0,prob,alea,forma1,forma2,shape1,shape2;
               ^
BAGS.c: In function 'Gibbs3':
BAGS.c:593:48: warning: unused variable 'resI' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                                                ^
BAGS.c:593:43: warning: unused variable 'rate' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                                           ^
BAGS.c:593:36: warning: unused variable 'escala' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                                    ^
BAGS.c:593:28: warning: unused variable 'escala3' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                            ^
BAGS.c:593:20: warning: unused variable 'escala2' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                    ^
BAGS.c:593:12: warning: unused variable 'escala1' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
            ^
BAGS.c:592:12: warning: unused variable 'formaAux' [-Wunused-variable]
     double formaAux;
            ^
BAGS.c:586:46: warning: variable 'ResSgmA' set but not used [-Wunused-but-set-variable]
     double ResRho1,ResRho2,ResSgmA1,ResSgmA2,ResSgmA;
                                              ^
BAGS.c:583:15: warning: variable 'AaPi' set but not used [-Wunused-but-set-variable]
     double Mm,AaPi,Ade,Ss,Rr,c0,prob,alea,forma1,forma2,shape1,shape2;
               ^
BAGS.c: In function 'Gibbs2':
BAGS.c:786:48: warning: unused variable 'resI' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                                                ^
BAGS.c:786:43: warning: unused variable 'rate' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                                           ^
BAGS.c:786:36: warning: unused variable 'escala' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                                    ^
BAGS.c:786:28: warning: unused variable 'escala3' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                            ^
BAGS.c:786:20: warning: unused variable 'escala2' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                    ^
BAGS.c:786:12: warning: unused variable 'escala1' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
            ^
BAGS.c:785:12: warning: unused variable 'formaAux' [-Wunused-variable]
     double formaAux;
            ^
BAGS.c:779:29: warning: variable 'ResSgmA' set but not used [-Wunused-but-set-variable]
     double ResRho1,ResSgmA1,ResSgmA;
                             ^
BAGS.c:776:15: warning: variable 'AaPi' set but not used [-Wunused-but-set-variable]
     double Mm,AaPi,Ade,Ss,Rr,c0,prob,alea,forma1,forma2,shape1,shape2;
               ^
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o BAGS.dll tmp.def BAGS.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/BAGS.buildbin-libdir/BAGS/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BAGS' as BAGS_2.23.0.zip
* DONE (BAGS)