Back to Workflows build report for BioC 3.8

BUILD WEB VIG report for methylationArrayAnalysis on malbec1

This page was generated on 2018-05-18 09:51:45 -0400 (Fri, 18 May 2018).

Package 12/21HostnameOS / ArchINSTALLBUILD
methylationArrayAnalysis 1.3.0
Jovana Maksimovic
Snapshot Date: 2018-05-18 07:35:07 -0400 (Fri, 18 May 2018)
URL: https://git.bioconductor.org/packages/methylationArrayAnalysis
Branch: master
Last Commit: a93fc35
Last Changed Date: 2018-04-30 10:10:33 -0400 (Mon, 30 Apr 2018)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: methylationArrayAnalysis
Version: 1.3.0
Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R -q -e 'rmarkdown::render(".buildwebvig/methylationArrayAnalysis/methylationArrayAnalysis.Rmd", output_format="BiocStyle:::html_fragment")' && /home/biocbuild/bbs-3.8-bioc/R/bin/R -q -e 'knitr::purl(".buildwebvig/methylationArrayAnalysis/methylationArrayAnalysis.Rmd", ".buildwebvig/methylationArrayAnalysis/methylationArrayAnalysis.R")'
StartedAt: 2018-05-18 08:44:16 -0400 (Fri, 18 May 2018)
EndedAt: 2018-05-18 09:03:20 -0400 (Fri, 18 May 2018)
EllapsedTime: 1143.6 seconds
RetCode: 0
Status:  OK 

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.8-bioc/R/bin/R -q -e 'rmarkdown::render(".buildwebvig/methylationArrayAnalysis/methylationArrayAnalysis.Rmd", output_format="BiocStyle:::html_fragment")' && /home/biocbuild/bbs-3.8-bioc/R/bin/R -q -e 'knitr::purl(".buildwebvig/methylationArrayAnalysis/methylationArrayAnalysis.Rmd", ".buildwebvig/methylationArrayAnalysis/methylationArrayAnalysis.R")'
###
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> rmarkdown::render(".buildwebvig/methylationArrayAnalysis/methylationArrayAnalysis.Rmd", output_format="BiocStyle:::html_fragment")


processing file: methylationArrayAnalysis.Rmd

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Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following object is masked from 'package:limma':

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    rowSums, sapply, setdiff, sort, table, tapply, union, unique,
    unsplit, which, which.max, which.min

Loading required package: GenomicRanges
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Attaching package: 'S4Vectors'

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Loading required package: IRanges
Loading required package: GenomeInfoDb
Loading required package: SummarizedExperiment
Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: DelayedArray
Loading required package: matrixStats

Attaching package: 'matrixStats'

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Loading required package: BiocParallel

Attaching package: 'DelayedArray'

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Loading required package: Biostrings
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Attaching package: 'Biostrings'

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Loading required package: bumphunter
Loading required package: foreach
Loading required package: iterators
Loading required package: locfit
locfit 1.5-9.1 	 2013-03-22
Setting options('download.file.method.GEOquery'='auto')
Setting options('GEOquery.inmemory.gpl'=FALSE)


Loading required package: grid
Loading required package: DSS
Loading required package: bsseq

Attaching package: 'bsseq'

The following object is masked from 'package:minfi':

    getMeth

Loading required package: splines
Loading required package: DMRcatedata

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output file: methylationArrayAnalysis.knit.md

/usr/bin/pandoc +RTS -K512m -RTS methylationArrayAnalysis.utf8.md --to html4 --from markdown+autolink_bare_uris+ascii_identifiers+tex_math_single_backslash+smart --output methylationArrayAnalysis.html --email-obfuscation none --self-contained --wrap preserve --standalone --section-divs --table-of-contents --toc-depth 3 --template /home/biocbuild/bbs-3.8-bioc/R/library/BiocStyle/resources/fragment.html --no-highlight --number-sections --mathjax --variable 'mathjax-url:https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML' --filter /usr/bin/pandoc-citeproc 

Output created: methylationArrayAnalysis.html
> 
> 
> knitr::purl(".buildwebvig/methylationArrayAnalysis/methylationArrayAnalysis.Rmd", ".buildwebvig/methylationArrayAnalysis/methylationArrayAnalysis.R")


processing file: .buildwebvig/methylationArrayAnalysis/methylationArrayAnalysis.Rmd

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output file: .buildwebvig/methylationArrayAnalysis/methylationArrayAnalysis.R

[1] ".buildwebvig/methylationArrayAnalysis/methylationArrayAnalysis.R"
> 
>