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CHECK report for tweeDEseqCountData on malbec1

This page was generated on 2019-04-16 15:26:04 -0400 (Tue, 16 Apr 2019).

Package 346/360HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
tweeDEseqCountData 1.20.0
Juan R Gonzalez
Snapshot Date: 2019-04-16 11:00:05 -0400 (Tue, 16 Apr 2019)
URL: https://git.bioconductor.org/packages/tweeDEseqCountData
Branch: RELEASE_3_8
Last Commit: a5ceedc
Last Changed Date: 2018-10-30 11:36:21 -0400 (Tue, 30 Oct 2018)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: tweeDEseqCountData
Version: 1.20.0
Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:tweeDEseqCountData.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings tweeDEseqCountData_1.20.0.tar.gz
StartedAt: 2019-04-16 14:09:20 -0400 (Tue, 16 Apr 2019)
EndedAt: 2019-04-16 14:09:45 -0400 (Tue, 16 Apr 2019)
EllapsedTime: 24.3 seconds
RetCode: 0
Status:  OK 
CheckDir: tweeDEseqCountData.Rcheck
Warnings: 0

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:tweeDEseqCountData.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings tweeDEseqCountData_1.20.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.8-data-experiment/meat/tweeDEseqCountData.Rcheck’
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘tweeDEseqCountData/DESCRIPTION’ ... OK
* this is package ‘tweeDEseqCountData’ version ‘1.20.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘tweeDEseqCountData’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 41.3Mb
  sub-directories of 1Mb or more:
    data  41.2Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: ‘Biobase’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
NB: .First.lib is obsolete and will not be used in R >= 3.0.0
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.8-data-experiment/meat/tweeDEseqCountData.Rcheck/00check.log’
for details.



Installation output

tweeDEseqCountData.Rcheck/00install.out

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### Running command:
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###   /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL tweeDEseqCountData
###
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* installing to library ‘/home/biocbuild/bbs-3.8-bioc/R/library’
* installing *source* package ‘tweeDEseqCountData’ ...
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (tweeDEseqCountData)

Tests output


Example timings

tweeDEseqCountData.Rcheck/tweeDEseqCountData-Ex.timings

nameusersystemelapsed
annotEnsembl630.3440.0040.514
cheung0.3160.0120.454
commonPickrell1Huang0.8480.0361.866
genderGenes0.0000.0000.196
hkGenes0.0040.0000.026
montgomery0.2200.0080.385
pickrell0.3960.0200.524