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CHECK report for CardinalWorkflows on malbec1

This page was generated on 2019-04-16 15:26:13 -0400 (Tue, 16 Apr 2019).

Package 42/360HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CardinalWorkflows 1.14.0
Kylie A. Bemis
Snapshot Date: 2019-04-16 11:00:05 -0400 (Tue, 16 Apr 2019)
URL: https://git.bioconductor.org/packages/CardinalWorkflows
Branch: RELEASE_3_8
Last Commit: bace2d8
Last Changed Date: 2018-10-30 11:36:23 -0400 (Tue, 30 Oct 2018)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: CardinalWorkflows
Version: 1.14.0
Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:CardinalWorkflows.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings CardinalWorkflows_1.14.0.tar.gz
StartedAt: 2019-04-16 13:30:41 -0400 (Tue, 16 Apr 2019)
EndedAt: 2019-04-16 13:32:05 -0400 (Tue, 16 Apr 2019)
EllapsedTime: 83.8 seconds
RetCode: 0
Status:  OK 
CheckDir: CardinalWorkflows.Rcheck
Warnings: 0

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:CardinalWorkflows.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings CardinalWorkflows_1.14.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.8-data-experiment/meat/CardinalWorkflows.Rcheck’
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘CardinalWorkflows/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘CardinalWorkflows’ version ‘1.14.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘CardinalWorkflows’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 134.9Mb
  sub-directories of 1Mb or more:
    data  134.9Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
               user system elapsed
rcc-data      8.696  0.392   9.325
cardinal-data 8.088  0.292   8.765
pig206-data   4.716  0.128   5.498
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.8-data-experiment/meat/CardinalWorkflows.Rcheck/00check.log’
for details.



Installation output

CardinalWorkflows.Rcheck/00install.out

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### Running command:
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###   /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL CardinalWorkflows
###
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* installing to library ‘/home/biocbuild/bbs-3.8-bioc/R/library’
* installing *source* package ‘CardinalWorkflows’ ...
** data
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (CardinalWorkflows)

Tests output


Example timings

CardinalWorkflows.Rcheck/CardinalWorkflows-Ex.timings

nameusersystemelapsed
cardinal-data8.0880.2928.765
pig206-data4.7160.1285.498
rcc-data8.6960.3929.325