Back to Multiple platform build/check report for BioC 3.8 experimental data

CHECK report for geneLenDataBase on malbec1

This page was generated on 2019-04-16 15:26:02 -0400 (Tue, 16 Apr 2019).

Package 129/360HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
geneLenDataBase 1.18.0
Nadia Davidson , Anthony Hawkins
Snapshot Date: 2019-04-16 11:00:05 -0400 (Tue, 16 Apr 2019)
URL: https://git.bioconductor.org/packages/geneLenDataBase
Branch: RELEASE_3_8
Last Commit: 77db87e
Last Changed Date: 2018-10-30 11:36:21 -0400 (Tue, 30 Oct 2018)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK [ WARNINGS ]UNNEEDED, same version exists in internal repository

Summary

Package: geneLenDataBase
Version: 1.18.0
Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:geneLenDataBase.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings geneLenDataBase_1.18.0.tar.gz
StartedAt: 2019-04-16 13:44:03 -0400 (Tue, 16 Apr 2019)
EndedAt: 2019-04-16 13:51:29 -0400 (Tue, 16 Apr 2019)
EllapsedTime: 445.8 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: geneLenDataBase.Rcheck
Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:geneLenDataBase.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings geneLenDataBase_1.18.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.8-data-experiment/meat/geneLenDataBase.Rcheck’
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘geneLenDataBase/DESCRIPTION’ ... OK
* this is package ‘geneLenDataBase’ version ‘1.18.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘geneLenDataBase’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 100.3Mb
  sub-directories of 1Mb or more:
    data  99.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
':::' call which should be '::': ‘GenomicFeatures:::supportedUCSCtables’
  See the note in ?`:::` about the use of this operator.
Unexported object imported by a ':::' call: ‘GenomicFeatures:::.UCSC_TXNAME2GENEID_MAPDEFS’
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... WARNING
Missing link or links in documentation object 'anoCar1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoCar1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoCar1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'aplCal1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'braFlo1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeJap1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caePb1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caePb2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeRem2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeRem3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cb1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cb3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.vegaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.vegaPseudoGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.nscanPasaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droEre1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droEre1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droGri1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droGri1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droPer1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droPer1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSec1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSec1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'gasAcu1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'gasAcu1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.acescan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.vegaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.vegaPseudoGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.acescan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.knownGeneOld3.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.sibGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'loxAfr3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.sibGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'petMar1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'priPac1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'sacCer1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'sacCer2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

See section 'Cross-references' in the 'Writing R Extensions' manual.

* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.8-data-experiment/meat/geneLenDataBase.Rcheck/00check.log’
for details.



Installation output

geneLenDataBase.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL geneLenDataBase
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.8-bioc/R/library’
* installing *source* package ‘geneLenDataBase’ ...
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (geneLenDataBase)

Tests output


Example timings

geneLenDataBase.Rcheck/geneLenDataBase-Ex.timings

nameusersystemelapsed
anoCar1.ensGene.LENGTH0.0760.0120.090
anoCar1.genscan.LENGTH0.0640.0280.092
anoCar1.xenoRefGene.LENGTH1.5560.0121.567
anoGam1.ensGene.LENGTH0.0840.0360.122
anoGam1.geneid.LENGTH0.0800.0240.101
anoGam1.genscan.LENGTH0.0640.0200.085
apiMel1.genscan.LENGTH0.0600.0160.074
apiMel2.ensGene.LENGTH0.1360.0200.157
apiMel2.geneid.LENGTH0.0880.0280.117
apiMel2.genscan.LENGTH0.0600.0200.078
aplCal1.xenoRefGene.LENGTH0.6120.0000.612
bosTau2.geneSymbol.LENGTH0.0680.0240.093
bosTau2.geneid.LENGTH0.3040.0120.316
bosTau2.genscan.LENGTH0.1040.0280.134
bosTau2.refGene.LENGTH0.0720.0240.099
bosTau2.sgpGene.LENGTH0.1240.0040.128
bosTau3.ensGene.LENGTH0.1800.0280.210
bosTau3.geneSymbol.LENGTH0.0720.0200.091
bosTau3.geneid.LENGTH0.1400.0160.156
bosTau3.genscan.LENGTH0.0920.0120.103
bosTau3.refGene.LENGTH0.0600.0280.087
bosTau3.sgpGene.LENGTH0.1320.0320.162
bosTau4.ensGene.LENGTH0.1760.0120.187
bosTau4.geneSymbol.LENGTH0.1320.0320.166
bosTau4.genscan.LENGTH0.0800.0120.091
bosTau4.nscanGene.LENGTH0.0480.0200.066
bosTau4.refGene.LENGTH0.0440.0320.079
braFlo1.xenoRefGene.LENGTH0.5160.0040.520
caeJap1.xenoRefGene.LENGTH0.4480.0040.452
caePb1.xenoRefGene.LENGTH0.6080.0000.609
caePb2.xenoRefGene.LENGTH0.5240.0000.526
caeRem2.xenoRefGene.LENGTH0.4640.0040.469
caeRem3.xenoRefGene.LENGTH0.4440.0000.446
calJac1.genscan.LENGTH0.1120.0280.140
calJac1.nscanGene.LENGTH0.1080.0000.110
calJac1.xenoRefGene.LENGTH0.8920.0000.891
canFam1.ensGene.LENGTH0.1160.0080.125
canFam1.geneSymbol.LENGTH0.0080.0000.008
canFam1.genscan.LENGTH0.0640.0080.071
canFam1.nscanGene.LENGTH0.0600.0040.066
canFam1.refGene.LENGTH0.0000.0080.009
canFam1.xenoRefGene.LENGTH0.6520.0000.655
canFam2.ensGene.LENGTH0.1160.0400.157
canFam2.geneSymbol.LENGTH0.0040.0040.008
canFam2.genscan.LENGTH0.0600.0040.063
canFam2.nscanGene.LENGTH0.0640.0080.069
canFam2.refGene.LENGTH0.0080.0000.008
canFam2.xenoRefGene.LENGTH0.9120.0040.915
cavPor3.ensGene.LENGTH0.1040.0080.116
cavPor3.genscan.LENGTH0.1000.0000.101
cavPor3.nscanGene.LENGTH0.0640.0160.082
cavPor3.xenoRefGene.LENGTH0.6640.0040.668
cb1.xenoRefGene.LENGTH0.4760.0040.479
cb3.xenoRefGene.LENGTH0.3800.0040.383
ce2.geneSymbol.LENGTH0.0680.0760.145
ce2.geneid.LENGTH0.0640.0000.062
ce2.refGene.LENGTH0.1040.0400.142
ce4.geneSymbol.LENGTH0.1000.0480.149
ce4.refGene.LENGTH0.1000.0440.145
ce4.xenoRefGene.LENGTH0.080.000.08
ce6.ensGene.LENGTH0.0880.0240.114
ce6.geneSymbol.LENGTH0.0880.0560.143
ce6.refGene.LENGTH0.1000.0440.142
ce6.xenoRefGene.LENGTH0.080.000.08
ci1.geneSymbol.LENGTH0.0080.0000.009
ci1.refGene.LENGTH0.0080.0000.007
ci1.xenoRefGene.LENGTH0.2000.0040.204
ci2.ensGene.LENGTH0.0720.0040.076
ci2.geneSymbol.LENGTH0.0080.0000.008
ci2.refGene.LENGTH0.0080.0000.007
ci2.xenoRefGene.LENGTH0.3000.0000.298
danRer3.ensGene.LENGTH0.1200.0440.164
danRer3.geneSymbol.LENGTH0.0800.0280.106
danRer3.refGene.LENGTH0.1400.0360.177
danRer4.ensGene.LENGTH0.1560.0000.155
danRer4.geneSymbol.LENGTH0.0800.0320.114
danRer4.genscan.LENGTH0.0720.0040.073
danRer4.nscanGene.LENGTH0.1160.0200.137
danRer4.refGene.LENGTH0.0560.0520.106
danRer5.ensGene.LENGTH0.1320.0000.131
danRer5.geneSymbol.LENGTH0.0760.0320.106
danRer5.refGene.LENGTH0.0760.0240.102
danRer5.vegaGene.LENGTH0.0600.0360.095
danRer5.vegaPseudoGene.LENGTH0.0040.0000.003
danRer6.ensGene.LENGTH0.1760.0200.196
danRer6.geneSymbol.LENGTH0.0720.0280.099
danRer6.refGene.LENGTH0.0840.0160.098
danRer6.xenoRefGene.LENGTH0.6000.0040.606
dm1.geneSymbol.LENGTH0.1040.0440.146
dm1.genscan.LENGTH0.0400.0120.053
dm1.refGene.LENGTH0.0960.0360.131
dm2.geneSymbol.LENGTH0.1120.0320.142
dm2.geneid.LENGTH0.0720.0160.088
dm2.genscan.LENGTH0.0320.0200.051
dm2.nscanGene.LENGTH0.060.000.06
dm2.refGene.LENGTH0.0960.0400.136
dm3.geneSymbol.LENGTH0.0680.0000.072
dm3.nscanPasaGene.LENGTH0.0920.0240.117
dm3.refGene.LENGTH0.0680.0000.070
dp2.genscan.LENGTH0.2200.0200.238
dp2.xenoRefGene.LENGTH0.2360.0000.236
dp3.geneid.LENGTH0.0480.0360.086
dp3.genscan.LENGTH0.0280.0240.051
dp3.xenoRefGene.LENGTH0.1280.0400.167
droAna1.geneid.LENGTH0.0760.0000.077
droAna1.genscan.LENGTH0.0240.0000.022
droAna1.xenoRefGene.LENGTH0.2200.0080.227
droAna2.genscan.LENGTH0.0520.0000.052
droAna2.xenoRefGene.LENGTH0.4840.0080.492
droEre1.genscan.LENGTH0.0480.0080.056
droEre1.xenoRefGene.LENGTH0.2960.0040.302
droGri1.genscan.LENGTH0.0520.0200.071
droGri1.xenoRefGene.LENGTH0.3240.0000.323
droMoj1.geneid.LENGTH0.140.020.16
droMoj1.genscan.LENGTH0.0560.0000.057
droMoj1.xenoRefGene.LENGTH0.2280.0120.243
droMoj2.genscan.LENGTH0.0520.0160.069
droMoj2.xenoRefGene.LENGTH0.2800.0040.284
droPer1.genscan.LENGTH0.7320.0280.759
droPer1.xenoRefGene.LENGTH0.3480.0080.358
droSec1.genscan.LENGTH0.0320.0240.056
droSec1.xenoRefGene.LENGTH0.2400.0000.242
droSim1.geneid.LENGTH0.0600.0200.078
droSim1.genscan.LENGTH0.0320.0120.045
droSim1.xenoRefGene.LENGTH0.2120.0000.210
droVir1.geneid.LENGTH0.0960.0120.106
droVir1.genscan.LENGTH0.0480.0280.078
droVir1.xenoRefGene.LENGTH0.2520.0000.254
droVir2.genscan.LENGTH0.0520.0160.066
droVir2.xenoRefGene.LENGTH0.2800.0080.289
droYak1.geneid.LENGTH0.0720.0480.121
droYak1.genscan.LENGTH0.0360.0200.060
droYak1.xenoRefGene.LENGTH0.2720.0000.272
droYak2.genscan.LENGTH0.0440.0400.083
droYak2.xenoRefGene.LENGTH0.4120.0000.411
equCab1.geneSymbol.LENGTH0.0040.0080.011
equCab1.geneid.LENGTH0.1160.0440.163
equCab1.nscanGene.LENGTH0.0600.0360.097
equCab1.refGene.LENGTH0.0040.0000.007
equCab1.sgpGene.LENGTH0.0720.0080.080
equCab2.ensGene.LENGTH0.1240.0200.143
equCab2.geneSymbol.LENGTH0.0120.0000.012
equCab2.nscanGene.LENGTH0.0720.0320.106
equCab2.refGene.LENGTH0.0040.0080.011
equCab2.xenoRefGene.LENGTH0.6040.0000.602
felCat3.ensGene.LENGTH0.0880.0000.090
felCat3.geneSymbol.LENGTH0.0040.0040.005
felCat3.geneid.LENGTH0.4720.0080.479
felCat3.genscan.LENGTH0.1200.0120.134
felCat3.nscanGene.LENGTH0.2680.0240.292
felCat3.refGene.LENGTH0.0040.0040.005
felCat3.sgpGene.LENGTH0.1360.0000.136
felCat3.xenoRefGene.LENGTH1.5440.0001.545
fr1.ensGene.LENGTH0.0960.0240.119
fr1.genscan.LENGTH0.0560.0040.063
fr2.ensGene.LENGTH0.1720.0200.194
galGal2.ensGene.LENGTH0.0640.0000.064
galGal2.geneSymbol.LENGTH0.0200.0120.032
galGal2.geneid.LENGTH0.0560.0240.081
galGal2.genscan.LENGTH0.0760.0280.103
galGal2.refGene.LENGTH0.0240.0080.030
galGal2.sgpGene.LENGTH0.0640.0440.110
galGal3.ensGene.LENGTH0.1080.0040.115
galGal3.geneSymbol.LENGTH0.0160.0120.031
galGal3.genscan.LENGTH0.0800.0240.103
galGal3.nscanGene.LENGTH0.0800.0000.081
galGal3.refGene.LENGTH0.0240.0080.030
galGal3.xenoRefGene.LENGTH0.5600.0040.566
gasAcu1.ensGene.LENGTH0.120.020.14
gasAcu1.nscanGene.LENGTH0.1080.0480.156
hg16.acembly.LENGTH0.4680.0000.466
hg16.ensGene.LENGTH0.0960.0080.104
hg16.exoniphy.LENGTH0.6920.0040.695
hg16.geneSymbol.LENGTH0.1120.0080.120
hg16.geneid.LENGTH0.0640.0360.099
hg16.genscan.LENGTH0.0680.0080.075
hg16.knownGene.LENGTH0.1400.0160.156
hg16.refGene.LENGTH0.1160.0040.118
hg16.sgpGene.LENGTH0.0600.0040.065
hg17.acembly.LENGTH0.9360.0000.933
hg17.acescan.LENGTH0.0120.0040.017
hg17.ccdsGene.LENGTH0.0440.0040.048
hg17.ensGene.LENGTH0.1400.0320.171
hg17.exoniphy.LENGTH0.3960.0000.395
hg17.geneSymbol.LENGTH0.1080.0080.115
hg17.geneid.LENGTH0.0720.0240.095
hg17.genscan.LENGTH0.0720.0040.075
hg17.knownGene.LENGTH0.1320.0120.145
hg17.refGene.LENGTH0.1200.0080.129
hg17.sgpGene.LENGTH0.0840.0160.097
hg17.vegaGene.LENGTH0.0520.0280.079
hg17.vegaPseudoGene.LENGTH0.0280.0040.031
hg17.xenoRefGene.LENGTH0.2440.0040.249
hg18.acembly.LENGTH1.4920.0001.490
hg18.acescan.LENGTH0.0120.0040.016
hg18.ccdsGene.LENGTH0.0400.0240.063
hg18.ensGene.LENGTH0.2160.0040.221
hg18.exoniphy.LENGTH0.420.000.42
hg18.geneSymbol.LENGTH0.1120.0120.127
hg18.geneid.LENGTH0.0840.0200.103
hg18.genscan.LENGTH0.0640.0120.073
hg18.knownGene.LENGTH0.1640.0080.172
hg18.knownGeneOld3.LENGTH0.0720.0240.096
hg18.refGene.LENGTH0.1080.0040.110
hg18.sgpGene.LENGTH0.0840.0120.098
hg18.sibGene.LENGTH0.3640.0000.362
hg18.xenoRefGene.LENGTH0.4680.0120.480
hg19.ccdsGene.LENGTH0.0760.0200.096
hg19.ensGene.LENGTH0.4240.0040.427
hg19.exoniphy.LENGTH0.4080.0040.414
hg19.geneSymbol.LENGTH0.1040.0160.119
hg19.knownGene.LENGTH0.2000.0240.223
hg19.nscanGene.LENGTH0.1560.0000.154
hg19.refGene.LENGTH0.1320.0080.143
hg19.xenoRefGene.LENGTH0.4200.0000.423
loxAfr3.xenoRefGene.LENGTH0.9640.0000.963
mm7.ensGene.LENGTH0.1320.0000.134
mm7.geneSymbol.LENGTH0.0960.0000.098
mm7.geneid.LENGTH0.1040.0120.117
mm7.genscan.LENGTH0.0640.0080.072
mm7.knownGene.LENGTH0.1160.0000.115
mm7.refGene.LENGTH0.1040.0000.102
mm7.sgpGene.LENGTH0.1080.0080.117
mm7.xenoRefGene.LENGTH0.4280.0000.428
mm8.ccdsGene.LENGTH0.0360.0080.044
mm8.ensGene.LENGTH0.1000.0080.107
mm8.geneSymbol.LENGTH0.0920.0000.091
mm8.geneid.LENGTH0.4120.0200.432
mm8.genscan.LENGTH0.0520.0120.066
mm8.knownGene.LENGTH0.1120.0000.115
mm8.nscanGene.LENGTH0.0640.0000.063
mm8.refGene.LENGTH0.0880.0040.093
mm8.sgpGene.LENGTH0.0800.0280.110
mm8.sibGene.LENGTH0.2960.0040.302
mm8.xenoRefGene.LENGTH0.4880.0200.508
mm9.acembly.LENGTH0.360.000.36
mm9.ccdsGene.LENGTH0.0520.0080.059
mm9.ensGene.LENGTH0.2120.0240.237
mm9.exoniphy.LENGTH0.4280.0000.427
mm9.geneSymbol.LENGTH0.0920.0000.093
mm9.geneid.LENGTH0.1040.0240.127
mm9.genscan.LENGTH0.0680.0040.071
mm9.knownGene.LENGTH0.1280.0360.162
mm9.nscanGene.LENGTH0.0600.0000.064
mm9.refGene.LENGTH0.0840.0000.086
mm9.sgpGene.LENGTH0.0920.0360.125
mm9.xenoRefGene.LENGTH0.4080.0240.433
monDom1.genscan.LENGTH0.0720.0080.080
monDom4.ensGene.LENGTH0.0840.0120.097
monDom4.geneSymbol.LENGTH0.0040.0000.005
monDom4.genscan.LENGTH0.0760.0360.111
monDom4.nscanGene.LENGTH0.0920.0240.117
monDom4.refGene.LENGTH0.0000.0040.005
monDom4.xenoRefGene.LENGTH0.4120.0000.413
monDom5.ensGene.LENGTH0.1400.0040.145
monDom5.geneSymbol.LENGTH0.0040.0000.005
monDom5.genscan.LENGTH0.0480.0080.056
monDom5.nscanGene.LENGTH0.1200.0000.117
monDom5.refGene.LENGTH0.0040.0000.005
monDom5.xenoRefGene.LENGTH0.9000.0120.914
ornAna1.ensGene.LENGTH0.1160.0280.145
ornAna1.geneSymbol.LENGTH0.0040.0000.003
ornAna1.refGene.LENGTH0.0000.0000.003
ornAna1.xenoRefGene.LENGTH0.6640.0000.666
oryLat2.ensGene.LENGTH0.1160.0040.122
oryLat2.geneSymbol.LENGTH0.0040.0000.005
oryLat2.refGene.LENGTH0.0000.0040.005
oryLat2.xenoRefGene.LENGTH0.6120.0000.612
panTro1.ensGene.LENGTH0.1040.0120.116
panTro1.geneid.LENGTH0.0720.0280.099
panTro1.genscan.LENGTH0.0560.0080.067
panTro1.xenoRefGene.LENGTH0.1240.0320.156
panTro2.ensGene.LENGTH0.1320.0040.136
panTro2.geneSymbol.LENGTH0.1080.0080.118
panTro2.genscan.LENGTH0.0640.0000.065
panTro2.nscanGene.LENGTH0.0600.0000.063
panTro2.refGene.LENGTH0.1000.0120.110
panTro2.xenoRefGene.LENGTH0.5400.0000.541
petMar1.xenoRefGene.LENGTH0.3360.0160.353
ponAbe2.ensGene.LENGTH1.1320.0241.157
ponAbe2.geneSymbol.LENGTH0.0080.0120.021
ponAbe2.genscan.LENGTH0.0560.0000.057
ponAbe2.nscanGene.LENGTH0.0600.0000.057
ponAbe2.refGene.LENGTH0.0120.0080.021
ponAbe2.xenoRefGene.LENGTH0.6840.0040.687
priPac1.xenoRefGene.LENGTH0.3640.0000.366
rheMac2.ensGene.LENGTH0.1480.0120.157
rheMac2.geneSymbol.LENGTH0.0080.0000.008
rheMac2.geneid.LENGTH0.0800.0040.085
rheMac2.nscanGene.LENGTH0.060.000.06
rheMac2.refGene.LENGTH0.0040.0040.008
rheMac2.sgpGene.LENGTH0.0800.0080.087
rheMac2.xenoRefGene.LENGTH0.4960.0000.498
rn3.ensGene.LENGTH0.1240.0360.159
rn3.geneSymbol.LENGTH0.0840.0240.108
rn3.geneid.LENGTH0.0520.0000.049
rn3.genscan.LENGTH0.0680.0040.071
rn3.knownGene.LENGTH0.0320.0160.050
rn3.nscanGene.LENGTH0.0600.0000.058
rn3.refGene.LENGTH0.0760.0280.103
rn3.sgpGene.LENGTH0.0560.0080.064
rn3.xenoRefGene.LENGTH0.6360.0000.637
rn4.ensGene.LENGTH0.1880.0080.198
rn4.geneSymbol.LENGTH0.0720.0360.104
rn4.geneid.LENGTH0.0960.0200.119
rn4.genscan.LENGTH0.0560.0080.067
rn4.knownGene.LENGTH0.0280.0200.050
rn4.nscanGene.LENGTH0.0800.0440.124
rn4.refGene.LENGTH0.0760.0280.102
rn4.sgpGene.LENGTH0.0960.0160.112
rn4.xenoRefGene.LENGTH0.3880.0000.388
sacCer1.ensGene.LENGTH0.0280.0080.039
sacCer2.ensGene.LENGTH0.0320.0080.039
strPur1.geneSymbol.LENGTH0.0080.0000.007
strPur1.genscan.LENGTH0.0680.0000.067
strPur1.refGene.LENGTH0.0080.0000.007
strPur1.xenoRefGene.LENGTH0.5120.0040.516
strPur2.geneSymbol.LENGTH0.0000.0040.006
strPur2.genscan.LENGTH0.1040.0000.101
strPur2.refGene.LENGTH0.0040.0000.005
strPur2.xenoRefGene.LENGTH0.6680.0000.668
supportedGeneIDs0.1120.0043.776
supportedGenomes0.1720.0081.203
taeGut1.ensGene.LENGTH0.1040.0040.110
taeGut1.geneSymbol.LENGTH0.0040.0000.005
taeGut1.genscan.LENGTH0.0760.0240.100
taeGut1.nscanGene.LENGTH0.0600.0200.079
taeGut1.refGene.LENGTH0.0040.0000.004
taeGut1.xenoRefGene.LENGTH0.6880.0000.686
tetNig1.ensGene.LENGTH0.1000.0280.127
tetNig1.geneid.LENGTH0.0640.0160.082
tetNig1.genscan.LENGTH0.080.020.10
tetNig1.nscanGene.LENGTH0.0880.0040.094
tetNig2.ensGene.LENGTH0.0880.0200.107
unfactor0.0040.0000.004
xenTro1.genscan.LENGTH0.0800.0040.085
xenTro2.ensGene.LENGTH0.1160.0120.131
xenTro2.geneSymbol.LENGTH0.0360.0280.063
xenTro2.genscan.LENGTH0.2920.0280.319
xenTro2.refGene.LENGTH0.0520.0120.064