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BUILD report for condcomp on merida1

This page was generated on 2019-04-16 12:10:57 -0400 (Tue, 16 Apr 2019).

Package 315/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
condcomp 1.0.1
Diogo P. P. Branco
Snapshot Date: 2019-04-15 17:01:12 -0400 (Mon, 15 Apr 2019)
URL: https://git.bioconductor.org/packages/condcomp
Branch: RELEASE_3_8
Last Commit: 8dafee7
Last Changed Date: 2019-01-04 13:26:15 -0400 (Fri, 04 Jan 2019)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK [ ERROR ] skipped  skipped 

Summary

Package: condcomp
Version: 1.0.1
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data condcomp
StartedAt: 2019-04-15 21:47:45 -0400 (Mon, 15 Apr 2019)
EndedAt: 2019-04-15 21:48:00 -0400 (Mon, 15 Apr 2019)
EllapsedTime: 14.5 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data condcomp
###
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* checking for file ‘condcomp/DESCRIPTION’ ... OK
* preparing ‘condcomp’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: Matrix
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:Matrix':

    colMeans, colSums, rowMeans, rowSums, which

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colMeans, colSums, colnames,
    dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
    intersect, is.unsorted, lapply, lengths, mapply, match, mget,
    order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
    rowMeans, rowSums, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which, which.max, which.min

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: ggplot2
Loading required package: VGAM
Loading required package: stats4
Loading required package: splines
Loading required package: DDRTree
Loading required package: irlba
Quitting from lines 55-70 (condcomp.Rmd) 
Error: processing vignette 'condcomp.Rmd' failed with diagnostics:
unused arguments (raw.data = data, normalization.method = "LogNormalize", do.scale = TRUE, do.center = TRUE, is.expr = monocle_cds@lowerDetectionLimit)
Execution halted