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INSTALL report for chipseq on tokay1

This page was generated on 2019-04-13 11:20:59 -0400 (Sat, 13 Apr 2019).

Package 249/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
chipseq 1.32.0
Bioconductor Package Maintainer
Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019)
URL: https://git.bioconductor.org/packages/chipseq
Branch: RELEASE_3_8
Last Commit: a7e65a9
Last Changed Date: 2018-10-30 11:41:45 -0400 (Tue, 30 Oct 2018)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: chipseq
Version: 1.32.0
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/chipseq_1.32.0.tar.gz && rm -rf chipseq.buildbin-libdir && mkdir chipseq.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=chipseq.buildbin-libdir chipseq_1.32.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL chipseq_1.32.0.zip && rm chipseq_1.32.0.tar.gz chipseq_1.32.0.zip
StartedAt: 2019-04-12 20:11:06 -0400 (Fri, 12 Apr 2019)
EndedAt: 2019-04-12 20:11:55 -0400 (Fri, 12 Apr 2019)
EllapsedTime: 48.9 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/chipseq_1.32.0.tar.gz && rm -rf chipseq.buildbin-libdir && mkdir chipseq.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=chipseq.buildbin-libdir chipseq_1.32.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL chipseq_1.32.0.zip && rm chipseq_1.32.0.tar.gz chipseq_1.32.0.zip
###
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100 1706k  100 1706k    0     0  24.3M      0 --:--:-- --:--:-- --:--:-- 25.6M

install for i386

* installing *source* package 'chipseq' ...
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c rlesumprod.c -o rlesumprod.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o chipseq.dll tmp.def rlesumprod.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/chipseq.buildbin-libdir/chipseq/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'chipseq'
    finding HTML links ... done
    chipseqFilter                           html  
    coverageplot                            html  
    cstest                                  html  
    diffPeakSummary                         html  
    estimate.mean.fraglen                   html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpiWsxzw/R.INSTALL1a481d097edc/chipseq/man/estimate.mean.fraglen.Rd:48: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpiWsxzw/R.INSTALL1a481d097edc/chipseq/man/estimate.mean.fraglen.Rd:50: file link 'RangedData' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpiWsxzw/R.INSTALL1a481d097edc/chipseq/man/estimate.mean.fraglen.Rd:55: file link 'IntegerRangesList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpiWsxzw/R.INSTALL1a481d097edc/chipseq/man/estimate.mean.fraglen.Rd:56: file link 'IntegerList' in package 'IRanges' does not exist and so has been treated as a topic
    islandDepthPlot                         html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpiWsxzw/R.INSTALL1a481d097edc/chipseq/man/islandDepthPlot.Rd:17: file link 'RleList-class' in package 'IRanges' does not exist and so has been treated as a topic
    laneSubsample                           html  
    peakCutoff                              html  
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpiWsxzw/R.INSTALL1a481d097edc/chipseq/man/peakCutoff.Rd:17: file link 'RleList-class' in package 'IRanges' does not exist and so has been treated as a topic
    peakSummary-methods                     html  
    subsetSummary                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'chipseq' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c rlesumprod.c -o rlesumprod.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o chipseq.dll tmp.def rlesumprod.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/chipseq.buildbin-libdir/chipseq/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'chipseq' as chipseq_1.32.0.zip
* DONE (chipseq)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'chipseq' successfully unpacked and MD5 sums checked
In R CMD INSTALL