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BUILD report for COMPASS on malbec1

This page was generated on 2019-04-16 11:50:23 -0400 (Tue, 16 Apr 2019).

Package 310/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
COMPASS 1.20.1
Greg Finak
Snapshot Date: 2019-04-15 17:01:12 -0400 (Mon, 15 Apr 2019)
URL: https://git.bioconductor.org/packages/COMPASS
Branch: RELEASE_3_8
Last Commit: 8c13ec8
Last Changed Date: 2019-01-04 13:25:59 -0400 (Fri, 04 Jan 2019)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK [ OK ] OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: COMPASS
Version: 1.20.1
Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data COMPASS
StartedAt: 2019-04-15 19:40:43 -0400 (Mon, 15 Apr 2019)
EndedAt: 2019-04-15 19:45:04 -0400 (Mon, 15 Apr 2019)
EllapsedTime: 260.7 seconds
RetCode: 0
Status:  OK 
PackageFile: COMPASS_1.20.1.tar.gz
PackageFileSize: 948.5 KiB

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data COMPASS
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* checking for file ‘COMPASS/DESCRIPTION’ ... OK
* preparing ‘COMPASS’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
Warning in system2(command, args, stdout = NULL, stderr = NULL, ...) :
  error in running command
* installing the package to build vignettes
* creating vignettes ... OK
* cleaning src
* running ‘cleanup’
Warning in system2(command, args, stdout = NULL, stderr = NULL, ...) :
  error in running command
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
WARNING: directory ‘COMPASS/examples’ is empty
WARNING: directory ‘COMPASS/incubator’ is empty
WARNING: directory ‘COMPASS/internal’ is empty
WARNING: directory ‘COMPASS/refactor’ is empty
WARNING: directory ‘COMPASS/scratch’ is empty
* looking to see if a ‘data/datalist’ file should be added
* building ‘COMPASS_1.20.1.tar.gz’