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INSTALL report for ADaCGH2 on malbec1

This page was generated on 2019-04-16 11:49:01 -0400 (Tue, 16 Apr 2019).

Package 15/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ADaCGH2 2.22.0
Ramon Diaz-Uriarte
Snapshot Date: 2019-04-15 17:01:12 -0400 (Mon, 15 Apr 2019)
URL: https://git.bioconductor.org/packages/ADaCGH2
Branch: RELEASE_3_8
Last Commit: dc1b45b
Last Changed Date: 2018-10-30 11:41:46 -0400 (Tue, 30 Oct 2018)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64 [ OK ] OK  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: ADaCGH2
Version: 2.22.0
Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL ADaCGH2
StartedAt: 2019-04-15 18:09:26 -0400 (Mon, 15 Apr 2019)
EndedAt: 2019-04-15 18:09:43 -0400 (Mon, 15 Apr 2019)
EllapsedTime: 16.5 seconds
RetCode: 0
Status:  OK 

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL ADaCGH2
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* installing to library ‘/home/biocbuild/bbs-3.8-bioc/R/library’
* installing *source* package ‘ADaCGH2’ ...
** libs
gcc -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c init.c -o init.o
gcc -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c r_haarseg.c -o r_haarseg.o
r_haarseg.c: In function ‘ad_HaarConv’:
r_haarseg.c:65:12: warning: unused variable ‘totalNorm’ [-Wunused-variable]
     double totalNorm;
            ^
r_haarseg.c: In function ‘ad_FindLocalPeaks’:
r_haarseg.c:152:8: warning: "/*" within comment [-Wcomment]
       }/* for j */
        ^
r_haarseg.c:176:8: warning: "/*" within comment [-Wcomment]
       }/* for j */
        ^
r_haarseg.c:128:9: warning: unused variable ‘j’ [-Wunused-variable]
   int k,j;
         ^
r_haarseg.c: In function ‘ad_HaarConv’:
r_haarseg.c:97:27: warning: ‘highNonNormed’ may be used uninitialized in this function [-Wmaybe-uninitialized]
             highNonNormed += signal[highEnd]*weight[highEnd] - signal[k-1]*weight[k-1]; 
                           ^
r_haarseg.c:96:26: warning: ‘lowNonNormed’ may be used uninitialized in this function [-Wmaybe-uninitialized]
             lowNonNormed += signal[lowEnd]*weight[lowEnd] - signal[k-1]*weight[k-1];
                          ^
r_haarseg.c:99:27: warning: ‘highWeightSum’ may be used uninitialized in this function [-Wmaybe-uninitialized]
             highWeightSum += weight[highEnd] - weight[k-1];
                           ^
r_haarseg.c:98:26: warning: ‘lowWeightSum’ may be used uninitialized in this function [-Wmaybe-uninitialized]
             lowWeightSum += weight[k-1] - weight[lowEnd];
                          ^
gcc -shared -L/home/biocbuild/bbs-3.8-bioc/R/lib -L/usr/local/lib -o ADaCGH2.so init.o r_haarseg.o -L/home/biocbuild/bbs-3.8-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.8-bioc/R/library/ADaCGH2/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘ADaCGH2.Rnw’ using ‘latin1’ 
** testing if installed package can be loaded
* DONE (ADaCGH2)