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BUILD BIN report for BiocNeighbors on merida1

This page was generated on 2019-04-16 12:10:55 -0400 (Tue, 16 Apr 2019).

Package 139/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BiocNeighbors 1.0.0
Aaron Lun
Snapshot Date: 2019-04-15 17:01:12 -0400 (Mon, 15 Apr 2019)
URL: https://git.bioconductor.org/packages/BiocNeighbors
Branch: RELEASE_3_8
Last Commit: e252fc0
Last Changed Date: 2018-10-30 11:42:09 -0400 (Tue, 30 Oct 2018)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: BiocNeighbors
Version: 1.0.0
Command: rm -rf BiocNeighbors.buildbin-libdir && mkdir BiocNeighbors.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh BiocNeighbors_1.0.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R BiocNeighbors.buildbin-libdir
StartedAt: 2019-04-16 03:44:40 -0400 (Tue, 16 Apr 2019)
EndedAt: 2019-04-16 03:45:34 -0400 (Tue, 16 Apr 2019)
EllapsedTime: 54.3 seconds
RetCode: 0
Status:  OK 
PackageFile: BiocNeighbors_1.0.0.tgz
PackageFileSize: 1.059 MiB

Command output

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### Running command:
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###   rm -rf BiocNeighbors.buildbin-libdir && mkdir BiocNeighbors.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh BiocNeighbors_1.0.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R BiocNeighbors.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=BiocNeighbors.buildbin-libdir BiocNeighbors_1.0.0.tar.gz'
>>>>>>> 

* installing *source* package ‘BiocNeighbors’ ...
** libs
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppAnnoy/include" -I/usr/local/include   -fPIC  -Wall -g -O2 -c annoy_stubs.cpp -o annoy_stubs.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppAnnoy/include" -I/usr/local/include   -fPIC  -Wall -g -O2 -c find_kmknn.cpp -o find_kmknn.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppAnnoy/include" -I/usr/local/include   -fPIC  -Wall -g -O2 -c find_neighbors.cpp -o find_neighbors.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppAnnoy/include" -I/usr/local/include   -fPIC  -Wall -g -O2 -c init.cpp -o init.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppAnnoy/include" -I/usr/local/include   -fPIC  -Wall -g -O2 -c kmknn.cpp -o kmknn.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppAnnoy/include" -I/usr/local/include   -fPIC  -Wall -g -O2 -c query_kmknn.cpp -o query_kmknn.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppAnnoy/include" -I/usr/local/include   -fPIC  -Wall -g -O2 -c query_neighbors.cpp -o query_neighbors.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppAnnoy/include" -I/usr/local/include   -fPIC  -Wall -g -O2 -c utils.cpp -o utils.o
clang++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o BiocNeighbors.so annoy_stubs.o find_kmknn.o find_neighbors.o init.o kmknn.o query_kmknn.o query_neighbors.o utils.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.8-bioc/meat/BiocNeighbors.buildbin-libdir/BiocNeighbors/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (BiocNeighbors)


>>>>>>> 
>>>>>>> FIXING LINKS FOR BiocNeighbors.buildbin-libdir/BiocNeighbors/libs//BiocNeighbors.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgcc_s.1.dylib" "BiocNeighbors.buildbin-libdir/BiocNeighbors/libs//BiocNeighbors.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgfortran.3.dylib" "BiocNeighbors.buildbin-libdir/BiocNeighbors/libs//BiocNeighbors.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.5.2.dylib" "BiocNeighbors.buildbin-libdir/BiocNeighbors/libs//BiocNeighbors.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.dylib" "BiocNeighbors.buildbin-libdir/BiocNeighbors/libs//BiocNeighbors.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libquadmath.0.dylib" "BiocNeighbors.buildbin-libdir/BiocNeighbors/libs//BiocNeighbors.so"