Back to Multiple platform build/check report for BioC 3.8
A[B]CDEFGHIJKLMNOPQRSTUVWXYZ

INSTALL report for BioQC on malbec1

This page was generated on 2019-04-16 11:51:43 -0400 (Tue, 16 Apr 2019).

Package 156/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BioQC 1.10.0
Jitao David Zhang
Snapshot Date: 2019-04-15 17:01:12 -0400 (Mon, 15 Apr 2019)
URL: https://git.bioconductor.org/packages/BioQC
Branch: RELEASE_3_8
Last Commit: 5c71aee
Last Changed Date: 2018-10-30 11:41:59 -0400 (Tue, 30 Oct 2018)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64 [ OK ] OK  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: BioQC
Version: 1.10.0
Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL BioQC
StartedAt: 2019-04-15 17:58:16 -0400 (Mon, 15 Apr 2019)
EndedAt: 2019-04-15 17:58:28 -0400 (Mon, 15 Apr 2019)
EllapsedTime: 12.0 seconds
RetCode: 0
Status:  OK 

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL BioQC
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.8-bioc/R/library’
* installing *source* package ‘BioQC’ ...
** libs
gcc -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG `/home/biocbuild/bbs-3.8-bioc/R/bin/Rscript -e 'Rcpp:::CxxFlags()'`  -I/usr/local/include   -fpic  -g -O2  -Wall -c gini.c -o gini.o
gcc -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG `/home/biocbuild/bbs-3.8-bioc/R/bin/Rscript -e 'Rcpp:::CxxFlags()'`  -I/usr/local/include   -fpic  -g -O2  -Wall -c init.c -o init.o
g++  -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG `/home/biocbuild/bbs-3.8-bioc/R/bin/Rscript -e 'Rcpp:::CxxFlags()'`  -I/usr/local/include   -fpic  -g -O2  -Wall -c read_gmt.cpp -o read_gmt.o
gcc -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG `/home/biocbuild/bbs-3.8-bioc/R/bin/Rscript -e 'Rcpp:::CxxFlags()'`  -I/usr/local/include   -fpic  -g -O2  -Wall -c stat_rank.c -o stat_rank.o
gcc -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG `/home/biocbuild/bbs-3.8-bioc/R/bin/Rscript -e 'Rcpp:::CxxFlags()'`  -I/usr/local/include   -fpic  -g -O2  -Wall -c wmw_test.c -o wmw_test.o
wmw_test.c: In function ‘wmw_test_list’:
wmw_test.c:105:0: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
 #pragma omp parallel for
 ^
wmw_test.c: In function ‘wmw_test’:
wmw_test.c:152:0: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
 #pragma omp parallel for
 ^
wmw_test.c: In function ‘signed_wmw_test_list’:
wmw_test.c:185:0: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
 #pragma omp parallel for
 ^
wmw_test.c: In function ‘signed_wmw_test’:
wmw_test.c:248:0: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
 #pragma omp parallel for
 ^
g++ -shared -L/home/biocbuild/bbs-3.8-bioc/R/lib -L/usr/local/lib -o BioQC.so gini.o init.o read_gmt.o stat_rank.o wmw_test.o -L/home/biocbuild/bbs-3.8-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.8-bioc/R/library/BioQC/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (BioQC)