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CHECK report for cancerdata on malbec2

This page was generated on 2018-10-16 14:18:00 -0400 (Tue, 16 Oct 2018).

Package 37/342HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
cancerdata 1.18.0
Daniel Kosztyla
Snapshot Date: 2018-10-16 07:35:22 -0400 (Tue, 16 Oct 2018)
URL: https://git.bioconductor.org/packages/cancerdata
Branch: RELEASE_3_7
Last Commit: e089bf1
Last Changed Date: 2018-04-30 10:31:27 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: cancerdata
Version: 1.18.0
Command: /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD check --install=check:cancerdata.install-out.txt --library=/home/biocbuild/bbs-3.7-bioc/R/library --no-vignettes --timings cancerdata_1.18.0.tar.gz
StartedAt: 2018-10-16 10:40:05 -0400 (Tue, 16 Oct 2018)
EndedAt: 2018-10-16 10:40:37 -0400 (Tue, 16 Oct 2018)
EllapsedTime: 31.4 seconds
RetCode: 0
Status:  OK 
CheckDir: cancerdata.Rcheck
Warnings: 0

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD check --install=check:cancerdata.install-out.txt --library=/home/biocbuild/bbs-3.7-bioc/R/library --no-vignettes --timings cancerdata_1.18.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.7-data-experiment/meat/cancerdata.Rcheck’
* using R version 3.5.1 Patched (2018-07-12 r74967)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘cancerdata/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘cancerdata’ version ‘1.18.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘cancerdata’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 26.8Mb
  sub-directories of 1Mb or more:
    data  26.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: ‘Biobase’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.7-data-experiment/meat/cancerdata.Rcheck/00check.log’
for details.



Installation output

cancerdata.Rcheck/00install.out

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### Running command:
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###   /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD INSTALL cancerdata
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* installing to library ‘/home/biocbuild/bbs-3.7-bioc/R/library’
* installing *source* package ‘cancerdata’ ...
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (cancerdata)

Tests output


Example timings

cancerdata.Rcheck/cancerdata-Ex.timings

nameusersystemelapsed
VEER0.0000.0000.001
VIJVER000
YOUNG000
cancerdata-package000