Back to Multiple platform build/check report for BioC 3.7 experimental data

CHECK report for geneLenDataBase on malbec2

This page was generated on 2018-10-16 14:17:20 -0400 (Tue, 16 Oct 2018).

Package 122/342HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
geneLenDataBase 1.16.0
Nadia Davidson , Anthony Hawkins
Snapshot Date: 2018-10-16 07:35:22 -0400 (Tue, 16 Oct 2018)
URL: https://git.bioconductor.org/packages/geneLenDataBase
Branch: RELEASE_3_7
Last Commit: c2a8b23
Last Changed Date: 2018-04-30 10:31:26 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK [ WARNINGS ]UNNEEDED, same version exists in internal repository

Summary

Package: geneLenDataBase
Version: 1.16.0
Command: /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD check --install=check:geneLenDataBase.install-out.txt --library=/home/biocbuild/bbs-3.7-bioc/R/library --no-vignettes --timings geneLenDataBase_1.16.0.tar.gz
StartedAt: 2018-10-16 10:59:21 -0400 (Tue, 16 Oct 2018)
EndedAt: 2018-10-16 11:06:30 -0400 (Tue, 16 Oct 2018)
EllapsedTime: 429.3 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: geneLenDataBase.Rcheck
Warnings: 1

Command output

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###
### Running command:
###
###   /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD check --install=check:geneLenDataBase.install-out.txt --library=/home/biocbuild/bbs-3.7-bioc/R/library --no-vignettes --timings geneLenDataBase_1.16.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.7-data-experiment/meat/geneLenDataBase.Rcheck’
* using R version 3.5.1 Patched (2018-07-12 r74967)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘geneLenDataBase/DESCRIPTION’ ... OK
* this is package ‘geneLenDataBase’ version ‘1.16.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘geneLenDataBase’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 100.3Mb
  sub-directories of 1Mb or more:
    data  99.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
':::' call which should be '::': ‘GenomicFeatures:::supportedUCSCtables’
  See the note in ?`:::` about the use of this operator.
Unexported object imported by a ':::' call: ‘GenomicFeatures:::.UCSC_TXNAME2GENEID_MAPDEFS’
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... WARNING
Missing link or links in documentation object 'anoCar1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoCar1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoCar1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'aplCal1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'braFlo1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeJap1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caePb1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caePb2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeRem2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeRem3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cb1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cb3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.vegaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.vegaPseudoGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.nscanPasaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droEre1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droEre1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droGri1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droGri1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droPer1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droPer1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSec1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSec1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'gasAcu1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'gasAcu1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.acescan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.vegaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.vegaPseudoGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.acescan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.knownGeneOld3.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.sibGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'loxAfr3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.sibGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'petMar1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'priPac1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'sacCer1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'sacCer2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

See section 'Cross-references' in the 'Writing R Extensions' manual.

* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                  user system elapsed
supportedGeneIDs 0.316  0.004   6.552
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.7-data-experiment/meat/geneLenDataBase.Rcheck/00check.log’
for details.



Installation output

geneLenDataBase.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD INSTALL geneLenDataBase
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.7-bioc/R/library’
* installing *source* package ‘geneLenDataBase’ ...
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (geneLenDataBase)

Tests output


Example timings

geneLenDataBase.Rcheck/geneLenDataBase-Ex.timings

nameusersystemelapsed
anoCar1.ensGene.LENGTH0.0960.0040.101
anoCar1.genscan.LENGTH0.0360.0600.097
anoCar1.xenoRefGene.LENGTH0.8400.0040.845
anoGam1.ensGene.LENGTH0.0880.0280.117
anoGam1.geneid.LENGTH0.060.040.10
anoGam1.genscan.LENGTH0.0640.0240.088
apiMel1.genscan.LENGTH0.0520.0200.073
apiMel2.ensGene.LENGTH0.1280.0320.161
apiMel2.geneid.LENGTH0.0720.0360.109
apiMel2.genscan.LENGTH0.1920.0160.205
aplCal1.xenoRefGene.LENGTH0.4360.0040.442
bosTau2.geneSymbol.LENGTH0.0600.0240.087
bosTau2.geneid.LENGTH0.2320.0000.232
bosTau2.genscan.LENGTH0.6760.0200.699
bosTau2.refGene.LENGTH0.0480.0320.083
bosTau2.sgpGene.LENGTH0.1040.0040.107
bosTau3.ensGene.LENGTH0.1280.0360.161
bosTau3.geneSymbol.LENGTH0.0480.0320.081
bosTau3.geneid.LENGTH0.1200.0160.134
bosTau3.genscan.LENGTH0.0880.0080.093
bosTau3.refGene.LENGTH0.0520.0280.078
bosTau3.sgpGene.LENGTH0.1200.0320.155
bosTau4.ensGene.LENGTH0.1440.0160.165
bosTau4.geneSymbol.LENGTH0.0480.0240.074
bosTau4.genscan.LENGTH0.0800.0120.089
bosTau4.nscanGene.LENGTH0.0480.0160.065
bosTau4.refGene.LENGTH0.0400.0360.073
braFlo1.xenoRefGene.LENGTH0.4280.0120.440
caeJap1.xenoRefGene.LENGTH0.4120.0080.421
caePb1.xenoRefGene.LENGTH0.4920.0000.491
caePb2.xenoRefGene.LENGTH0.4960.0040.501
caeRem2.xenoRefGene.LENGTH0.4560.0040.458
caeRem3.xenoRefGene.LENGTH0.3680.0000.369
calJac1.genscan.LENGTH0.2000.0320.232
calJac1.nscanGene.LENGTH0.1240.0000.128
calJac1.xenoRefGene.LENGTH0.8520.0040.857
canFam1.ensGene.LENGTH0.1600.0000.159
canFam1.geneSymbol.LENGTH0.0080.0000.009
canFam1.genscan.LENGTH0.0640.0120.080
canFam1.nscanGene.LENGTH0.0760.0000.076
canFam1.refGene.LENGTH0.0040.0080.010
canFam1.xenoRefGene.LENGTH0.6840.0000.683
canFam2.ensGene.LENGTH0.260.020.28
canFam2.geneSymbol.LENGTH0.0960.0120.108
canFam2.genscan.LENGTH0.0640.0000.064
canFam2.nscanGene.LENGTH0.0760.0040.083
canFam2.refGene.LENGTH0.0080.0000.009
canFam2.xenoRefGene.LENGTH0.5800.0040.585
cavPor3.ensGene.LENGTH0.0920.0120.106
cavPor3.genscan.LENGTH0.0960.0000.093
cavPor3.nscanGene.LENGTH0.0680.0160.085
cavPor3.xenoRefGene.LENGTH0.7440.0040.746
cb1.xenoRefGene.LENGTH0.4200.0000.419
cb3.xenoRefGene.LENGTH0.3680.0000.369
ce2.geneSymbol.LENGTH0.0960.0600.152
ce2.geneid.LENGTH0.0560.0000.058
ce2.refGene.LENGTH0.0880.0720.160
ce4.geneSymbol.LENGTH0.0960.0480.144
ce4.refGene.LENGTH0.0840.0640.148
ce4.xenoRefGene.LENGTH0.0800.0000.082
ce6.ensGene.LENGTH0.1000.0160.116
ce6.geneSymbol.LENGTH0.0960.0520.149
ce6.refGene.LENGTH0.0840.0520.136
ce6.xenoRefGene.LENGTH0.0760.0040.080
ci1.geneSymbol.LENGTH0.0040.0040.008
ci1.refGene.LENGTH0.0080.0000.008
ci1.xenoRefGene.LENGTH0.1600.0000.161
ci2.ensGene.LENGTH0.0640.0040.069
ci2.geneSymbol.LENGTH0.0040.0040.008
ci2.refGene.LENGTH0.0080.0000.007
ci2.xenoRefGene.LENGTH0.2880.0000.287
danRer3.ensGene.LENGTH0.1280.0240.152
danRer3.geneSymbol.LENGTH0.0760.0400.115
danRer3.refGene.LENGTH0.0800.0400.118
danRer4.ensGene.LENGTH0.1080.0000.110
danRer4.geneSymbol.LENGTH0.0800.0200.103
danRer4.genscan.LENGTH0.0560.0080.068
danRer4.nscanGene.LENGTH0.2000.0200.219
danRer4.refGene.LENGTH0.0640.0320.099
danRer5.ensGene.LENGTH0.1160.0000.117
danRer5.geneSymbol.LENGTH0.0840.0200.104
danRer5.refGene.LENGTH0.0880.0240.109
danRer5.vegaGene.LENGTH0.0800.0200.101
danRer5.vegaPseudoGene.LENGTH0.0040.0000.004
danRer6.ensGene.LENGTH0.1800.0360.213
danRer6.geneSymbol.LENGTH0.0920.0320.124
danRer6.refGene.LENGTH0.0720.0400.110
danRer6.xenoRefGene.LENGTH0.540.000.54
dm1.geneSymbol.LENGTH0.0920.0600.151
dm1.genscan.LENGTH0.0400.0160.058
dm1.refGene.LENGTH0.1000.0440.145
dm2.geneSymbol.LENGTH0.0920.0600.151
dm2.geneid.LENGTH0.0720.0160.089
dm2.genscan.LENGTH0.0440.0080.052
dm2.nscanGene.LENGTH0.0440.0040.050
dm2.refGene.LENGTH0.0920.0440.136
dm3.geneSymbol.LENGTH0.0680.0040.072
dm3.nscanPasaGene.LENGTH0.1000.0160.116
dm3.refGene.LENGTH0.0680.0000.067
dp2.genscan.LENGTH0.0520.0120.062
dp2.xenoRefGene.LENGTH0.4640.0000.465
dp3.geneid.LENGTH0.0520.0360.091
dp3.genscan.LENGTH0.0480.0120.058
dp3.xenoRefGene.LENGTH0.1320.0560.186
droAna1.geneid.LENGTH0.0800.0080.090
droAna1.genscan.LENGTH0.0240.0000.026
droAna1.xenoRefGene.LENGTH0.2320.0120.241
droAna2.genscan.LENGTH0.0560.0000.056
droAna2.xenoRefGene.LENGTH0.3520.0080.362
droEre1.genscan.LENGTH0.0480.0120.060
droEre1.xenoRefGene.LENGTH0.3360.0200.357
droGri1.genscan.LENGTH0.0680.0120.080
droGri1.xenoRefGene.LENGTH0.3480.0000.346
droMoj1.geneid.LENGTH0.8480.0320.879
droMoj1.genscan.LENGTH0.0520.0000.053
droMoj1.xenoRefGene.LENGTH0.2240.0280.251
droMoj2.genscan.LENGTH0.0520.0240.074
droMoj2.xenoRefGene.LENGTH0.3080.0120.319
droPer1.genscan.LENGTH0.0400.0400.079
droPer1.xenoRefGene.LENGTH0.3720.0000.372
droSec1.genscan.LENGTH0.0520.0120.064
droSec1.xenoRefGene.LENGTH0.30.00.3
droSim1.geneid.LENGTH0.0520.0320.085
droSim1.genscan.LENGTH0.0400.0160.053
droSim1.xenoRefGene.LENGTH0.2040.0000.205
droVir1.geneid.LENGTH0.120.000.12
droVir1.genscan.LENGTH0.0520.0320.083
droVir1.xenoRefGene.LENGTH0.2640.0000.263
droVir2.genscan.LENGTH0.0480.0240.072
droVir2.xenoRefGene.LENGTH0.2960.0080.306
droYak1.geneid.LENGTH0.0640.0320.095
droYak1.genscan.LENGTH0.0400.0200.061
droYak1.xenoRefGene.LENGTH0.2200.0040.224
droYak2.genscan.LENGTH0.0400.0200.061
droYak2.xenoRefGene.LENGTH0.3600.0040.365
equCab1.geneSymbol.LENGTH0.0080.0040.009
equCab1.geneid.LENGTH0.0880.0360.123
equCab1.nscanGene.LENGTH0.0680.0240.094
equCab1.refGene.LENGTH0.0000.0080.009
equCab1.sgpGene.LENGTH0.0840.0000.085
equCab2.ensGene.LENGTH0.1080.0280.139
equCab2.geneSymbol.LENGTH0.0160.0000.013
equCab2.nscanGene.LENGTH0.0720.0520.124
equCab2.refGene.LENGTH0.0120.0040.016
equCab2.xenoRefGene.LENGTH0.6480.0040.651
felCat3.ensGene.LENGTH0.1160.0040.120
felCat3.geneSymbol.LENGTH0.0040.0040.007
felCat3.geneid.LENGTH0.6360.0040.643
felCat3.genscan.LENGTH0.1280.0200.148
felCat3.nscanGene.LENGTH0.1160.0200.135
felCat3.refGene.LENGTH0.0080.0000.007
felCat3.sgpGene.LENGTH0.1320.0040.136
felCat3.xenoRefGene.LENGTH1.2160.0081.227
fr1.ensGene.LENGTH0.1000.0160.119
fr1.genscan.LENGTH0.0640.0040.065
fr2.ensGene.LENGTH0.1600.0280.188
galGal2.ensGene.LENGTH0.0640.0000.062
galGal2.geneSymbol.LENGTH0.0240.0080.033
galGal2.geneid.LENGTH0.0600.0280.085
galGal2.genscan.LENGTH0.0880.0200.109
galGal2.refGene.LENGTH0.0160.0160.032
galGal2.sgpGene.LENGTH0.0920.0200.109
galGal3.ensGene.LENGTH0.0880.0120.099
galGal3.geneSymbol.LENGTH0.0240.0080.033
galGal3.genscan.LENGTH0.0680.0400.107
galGal3.nscanGene.LENGTH0.0800.0000.079
galGal3.refGene.LENGTH0.0200.0080.029
galGal3.xenoRefGene.LENGTH0.7080.0000.708
gasAcu1.ensGene.LENGTH0.1320.0320.165
gasAcu1.nscanGene.LENGTH0.1280.0320.157
hg16.acembly.LENGTH0.4080.0000.411
hg16.ensGene.LENGTH0.0880.0160.101
hg16.exoniphy.LENGTH0.8400.0080.850
hg16.geneSymbol.LENGTH0.1120.0080.118
hg16.geneid.LENGTH0.0800.0280.109
hg16.genscan.LENGTH0.0760.0080.082
hg16.knownGene.LENGTH0.1320.0240.157
hg16.refGene.LENGTH0.1000.0120.114
hg16.sgpGene.LENGTH0.0680.0000.066
hg17.acembly.LENGTH0.4280.0000.428
hg17.acescan.LENGTH0.0120.0080.019
hg17.ccdsGene.LENGTH0.0200.0280.048
hg17.ensGene.LENGTH0.1360.0320.170
hg17.exoniphy.LENGTH1.1600.0001.157
hg17.geneSymbol.LENGTH0.1000.0120.114
hg17.geneid.LENGTH0.0800.0160.096
hg17.genscan.LENGTH0.0640.0080.072
hg17.knownGene.LENGTH0.1160.0200.135
hg17.refGene.LENGTH0.0880.0240.113
hg17.sgpGene.LENGTH0.0880.0160.102
hg17.vegaGene.LENGTH0.060.020.08
hg17.vegaPseudoGene.LENGTH0.0280.0040.035
hg17.xenoRefGene.LENGTH0.2160.0000.217
hg18.acembly.LENGTH0.4280.0000.426
hg18.acescan.LENGTH0.0120.0040.019
hg18.ccdsGene.LENGTH0.0600.0080.069
hg18.ensGene.LENGTH0.1960.0040.201
hg18.exoniphy.LENGTH0.4320.0040.436
hg18.geneSymbol.LENGTH0.1120.0080.117
hg18.geneid.LENGTH0.0720.0280.099
hg18.genscan.LENGTH0.0760.0000.076
hg18.knownGene.LENGTH0.1640.0160.182
hg18.knownGeneOld3.LENGTH0.0720.0320.106
hg18.refGene.LENGTH0.1160.0040.122
hg18.sgpGene.LENGTH0.0960.0160.113
hg18.sibGene.LENGTH0.3960.0000.395
hg18.xenoRefGene.LENGTH0.4080.0160.424
hg19.ccdsGene.LENGTH0.0600.0280.086
hg19.ensGene.LENGTH0.3440.0080.353
hg19.exoniphy.LENGTH0.4320.0040.437
hg19.geneSymbol.LENGTH0.1080.0160.126
hg19.knownGene.LENGTH0.1960.0360.231
hg19.nscanGene.LENGTH0.1560.0040.161
hg19.refGene.LENGTH0.1160.0080.125
hg19.xenoRefGene.LENGTH0.4000.0000.402
loxAfr3.xenoRefGene.LENGTH1.0800.0041.084
mm7.ensGene.LENGTH0.1120.0000.115
mm7.geneSymbol.LENGTH0.0800.0040.084
mm7.geneid.LENGTH0.0920.0200.115
mm7.genscan.LENGTH0.0640.0080.075
mm7.knownGene.LENGTH0.0920.0040.097
mm7.refGene.LENGTH0.0840.0000.085
mm7.sgpGene.LENGTH0.1000.0120.111
mm7.xenoRefGene.LENGTH0.3800.0040.386
mm8.ccdsGene.LENGTH0.0400.0080.045
mm8.ensGene.LENGTH0.0920.0200.112
mm8.geneSymbol.LENGTH0.0840.0000.083
mm8.geneid.LENGTH0.0920.0240.114
mm8.genscan.LENGTH0.0600.0080.070
mm8.knownGene.LENGTH0.0960.0000.099
mm8.nscanGene.LENGTH0.0680.0000.071
mm8.refGene.LENGTH0.0840.0040.088
mm8.sgpGene.LENGTH0.1000.0120.109
mm8.sibGene.LENGTH0.2480.0000.251
mm8.xenoRefGene.LENGTH0.3640.0400.406
mm9.acembly.LENGTH0.3960.0040.399
mm9.ccdsGene.LENGTH0.0440.0200.064
mm9.ensGene.LENGTH0.2280.0200.246
mm9.exoniphy.LENGTH0.4680.0080.477
mm9.geneSymbol.LENGTH0.1000.0000.101
mm9.geneid.LENGTH0.0880.0320.120
mm9.genscan.LENGTH0.0640.0040.070
mm9.knownGene.LENGTH0.1400.0320.172
mm9.nscanGene.LENGTH0.3320.0040.337
mm9.refGene.LENGTH0.1000.0000.099
mm9.sgpGene.LENGTH0.1080.0200.128
mm9.xenoRefGene.LENGTH0.4240.0120.436
monDom1.genscan.LENGTH0.0680.0160.081
monDom4.ensGene.LENGTH0.0960.0000.095
monDom4.geneSymbol.LENGTH0.0040.0000.006
monDom4.genscan.LENGTH0.0840.0320.120
monDom4.nscanGene.LENGTH0.0960.0280.125
monDom4.refGene.LENGTH0.0000.0040.006
monDom4.xenoRefGene.LENGTH0.3920.0000.396
monDom5.ensGene.LENGTH0.1280.0000.129
monDom5.geneSymbol.LENGTH0.0000.0040.005
monDom5.genscan.LENGTH0.0560.0000.056
monDom5.nscanGene.LENGTH0.1240.0000.124
monDom5.refGene.LENGTH0.0040.0000.005
monDom5.xenoRefGene.LENGTH0.7520.0000.750
ornAna1.ensGene.LENGTH0.1320.0320.165
ornAna1.geneSymbol.LENGTH0.0000.0040.003
ornAna1.refGene.LENGTH0.0040.0000.004
ornAna1.xenoRefGene.LENGTH0.6440.0040.650
oryLat2.ensGene.LENGTH0.0960.0120.108
oryLat2.geneSymbol.LENGTH0.0080.0000.007
oryLat2.refGene.LENGTH0.0040.0000.006
oryLat2.xenoRefGene.LENGTH1.6040.0001.603
panTro1.ensGene.LENGTH0.1080.0080.115
panTro1.geneid.LENGTH0.0640.0400.103
panTro1.genscan.LENGTH0.0600.0040.065
panTro1.xenoRefGene.LENGTH0.1480.0120.161
panTro2.ensGene.LENGTH0.1280.0160.144
panTro2.geneSymbol.LENGTH0.1160.0080.124
panTro2.genscan.LENGTH0.0640.0040.064
panTro2.nscanGene.LENGTH0.0520.0040.059
panTro2.refGene.LENGTH0.1160.0080.125
panTro2.xenoRefGene.LENGTH0.5360.0000.534
petMar1.xenoRefGene.LENGTH0.3080.0160.325
ponAbe2.ensGene.LENGTH0.1000.0280.126
ponAbe2.geneSymbol.LENGTH0.0200.0040.023
ponAbe2.genscan.LENGTH0.0560.0040.062
ponAbe2.nscanGene.LENGTH0.060.000.06
ponAbe2.refGene.LENGTH0.0160.0080.024
ponAbe2.xenoRefGene.LENGTH0.6680.0000.668
priPac1.xenoRefGene.LENGTH0.4080.0000.407
rheMac2.ensGene.LENGTH0.1760.0080.185
rheMac2.geneSymbol.LENGTH0.0040.0040.008
rheMac2.geneid.LENGTH0.0880.0080.095
rheMac2.nscanGene.LENGTH0.0720.0000.069
rheMac2.refGene.LENGTH0.0040.0040.008
rheMac2.sgpGene.LENGTH0.0840.0120.096
rheMac2.xenoRefGene.LENGTH0.5520.0040.557
rn3.ensGene.LENGTH0.1360.0200.156
rn3.geneSymbol.LENGTH0.0880.0280.115
rn3.geneid.LENGTH0.0560.0000.054
rn3.genscan.LENGTH0.0720.0040.078
rn3.knownGene.LENGTH0.0280.0200.050
rn3.nscanGene.LENGTH0.0600.0000.061
rn3.refGene.LENGTH0.0760.0320.110
rn3.sgpGene.LENGTH0.0680.0000.068
rn3.xenoRefGene.LENGTH0.6880.0000.689
rn4.ensGene.LENGTH0.1480.0080.156
rn4.geneSymbol.LENGTH0.0520.0520.104
rn4.geneid.LENGTH0.1120.0160.127
rn4.genscan.LENGTH0.0680.0080.075
rn4.knownGene.LENGTH0.0320.0200.054
rn4.nscanGene.LENGTH0.0720.0560.127
rn4.refGene.LENGTH0.0800.0240.101
rn4.sgpGene.LENGTH0.100.020.12
rn4.xenoRefGene.LENGTH0.3520.0080.361
sacCer1.ensGene.LENGTH0.0240.0160.039
sacCer2.ensGene.LENGTH0.0240.0200.040
strPur1.geneSymbol.LENGTH0.0080.0000.007
strPur1.genscan.LENGTH0.0680.0000.069
strPur1.refGene.LENGTH0.0040.0040.007
strPur1.xenoRefGene.LENGTH0.4880.0040.492
strPur2.geneSymbol.LENGTH0.0080.0000.006
strPur2.genscan.LENGTH0.1120.0040.115
strPur2.refGene.LENGTH0.0040.0000.005
strPur2.xenoRefGene.LENGTH0.7400.0040.747
supportedGeneIDs0.3160.0046.552
supportedGenomes0.1200.0000.823
taeGut1.ensGene.LENGTH0.0680.0040.074
taeGut1.geneSymbol.LENGTH0.0040.0000.003
taeGut1.genscan.LENGTH0.0520.0240.073
taeGut1.nscanGene.LENGTH0.0400.0240.063
taeGut1.refGene.LENGTH0.0040.0000.003
taeGut1.xenoRefGene.LENGTH0.4520.0000.453
tetNig1.ensGene.LENGTH0.1120.0200.132
tetNig1.geneid.LENGTH0.0760.0120.089
tetNig1.genscan.LENGTH0.0560.0520.110
tetNig1.nscanGene.LENGTH0.0760.0160.095
tetNig2.ensGene.LENGTH0.0800.0160.100
unfactor0.0000.0040.004
xenTro1.genscan.LENGTH0.0880.0000.088
xenTro2.ensGene.LENGTH0.1200.0160.134
xenTro2.geneSymbol.LENGTH0.0440.0200.063
xenTro2.genscan.LENGTH0.0880.0240.111
xenTro2.refGene.LENGTH0.0400.0240.064